Odobenus rosmarus divergens (Pacific walrus): 101386487
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Entry
101386487 CDS
T05148
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
oro
Odobenus rosmarus divergens (Pacific walrus)
Pathway
oro03030
DNA replication
oro03410
Base excision repair
oro03420
Nucleotide excision repair
oro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101386487 (LIG1)
03410 Base excision repair
101386487 (LIG1)
03420 Nucleotide excision repair
101386487 (LIG1)
03430 Mismatch repair
101386487 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oro03032
]
101386487 (LIG1)
03400 DNA repair and recombination proteins [BR:
oro03400
]
101386487 (LIG1)
Enzymes [BR:
oro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101386487 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
101386487 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
101386487 (LIG1)
DNA replication proteins [BR:
oro03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
101386487 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
101386487 (LIG1)
DNA repair and recombination proteins [BR:
oro03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
101386487 (LIG1)
NER (nucleotide excision repair)
Other NER factors
101386487 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
101386487 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
101386487
NCBI-ProteinID:
XP_004400969
UniProt:
A0A2U3VZE2
LinkDB
All DBs
Position
Unknown
AA seq
915 aa
AA seq
DB search
MQRSIMSFFYPKKEGKVKKPEKETSNSVRETEPPPKVALKERNGEVPESDSPVKRPGRKV
ARVLGSEGEEEDEALTPSKGQKPAPSSPQVSPPSPVTFPESSPSLSNTSPVDISPAGIPK
RRTARKQLPKRTVRDALEEQGKDESREAKRRKEEGAETPLESLTEPEVTQKKEAEGEGQP
MTPPEHAETSSEPPPDSILEPEVAGEQGAQEEDPAKPPARAPKTVSSFFAPRKPATKKEG
KEEGPGTARQEEAKGPLDPPSYNPAKNNYHPIDDACWKPGQKVPYLAVARTFEKIEEVSA
RLRMVETLSNLLRSVVTLSPPDLLPILYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGR
QLESVKAEAAEKGDVGLVAENSRSTQRLMLPPPALTAAGVFTKFRDIARLAGSASTAKKM
DVIKGLFVACRHSEARYIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQELPPAVVDAG
KGRTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGVPLKPML
AHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISR
IPKIKLPSVTSFILDTEAVAWDQEKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIY
LNGESLVREPLSRRRQLLRENFVPTEGEFVFATSLDTKDTEQIAEFLEQSVKDSCEGLMV
KTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYD
EESEELQAICKLGTGFSDEELEEHYQRLQALVLPTPRSYVRADGAVAPDHWLDPSAVWEV
KCADLSLSPIYPAARGLVDGEKGISLRFPRFIRVREDKKPEEATTSAQVASLYRKQSQIQ
NQQGADLDSDPEDFY
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagtattatgtcatttttctaccccaagaaggagggcaaagtgaaaaagcca
gagaaggagacctccaacagcgtcagagagacagagccacctccaaaggtggcactgaag
gagcgcaatggagaggtgcctgagagcgattctccagtgaagaggccagggcggaaggtg
gcccgggtcctgggcagtgaaggggaagaggaggacgaagccctcacgccctccaaaggc
cagaagcctgcccccagctctccacaagtctcccctcccagccctgtcacatttcccgag
agcagcccctccctctccaacacctctcctgtggacatctccccagcagggatcccaaag
cggcgcacagctcggaagcagcttcctaagcggacagtacgggatgccctggaggagcag
ggcaaggacgagagcagagaggccaagaggaggaaggaggaaggagctgagaccccactg
gaaagcctcacggagcctgaagtgacccaaaagaaagaagcggaaggggagggccagccc
atgacgccccctgagcacgcagagacctcctcagagcccccgccagacagcatcttggag
cctgaggtggcaggggagcagggggctcaagaggaggacccggccaagccgcccgccaga
gcgcccaagacggtcagcagcttcttcgccccccggaaaccggcaaccaagaaagaaggg
aaagaagagggacctggcacagcaagacaggaggaggccaagggacccctggaccccccc
agctacaatcctgccaagaacaactaccatcccatcgacgacgcatgctggaagccaggc
cagaaggtcccttacctagctgtggcccggacatttgagaagattgaggaagtttctgct
cggctccggatggtggagacgctgagcaacttgctgcgttccgtggtgaccctgtcacct
ccagacctcctccccatcctctacctcagcctcaaccgcctcgggccaccccaacagggc
ctggagcttggcgtcggtgacggcgtcctcctcaaggcggtggcccaggccacagggcgg
cagctggagtctgtcaaggccgaggcagctgagaagggcgacgtggggctggtggccgag
aacagccgcagcacccagagactcatgctgcccccacccgctctcactgccgccggggtc
ttcaccaagttccgagacatcgcccggctggccggcagtgcttccacagccaagaagatg
gacgtcatcaaaggcctctttgtcgcctgccgccactcagaagcccgatacatcgccaga
gccctgagcggacggctgcgcctcgggctggcagagcagtcggtgctggccgccctcgcc
caggccgtgagcctcacgcccccaggccaagaattgcccccggccgtcgtggatgctggg
aagggcaggacagcggaggcccgaaagacgtggctagaggagcaaggcatgatcctgaag
cagacgttctgcgaggtgcctgacctggaccggatcatccctgtgctgctggagcacggc
ctggagcgcctcccggagcactgcaagctgagcccaggggttcccctgaaaccgatgctg
gcgcaccccacacgcggtgtcagcgaggtcctgaaacgctttgaggaggcagctttcacc
tgcgagtacaaatacgacgggcagagggcgcagatccacgtcctggaaggcggggaggtg
aagatcttcagcaggaatcaggaagacaataccggaaagtacccggacatcatcagccgc
atccccaagattaaactcccgtcagtcacatccttcatcctggacacggaagccgtggct
tgggaccaggaaaagaagcagatccagccattccaagtgcttaccacccgcaaacgcaag
gaggtggatgcggcagagatccaggtgcaggtgtgtctgtatgccttcgacctcatctac
ctcaatggagagtccctggtgcgtgagccgctttcccgacgccggcagcttctccgggag
aacttcgtgccgacggagggcgagtttgtcttcgccacctccctggacaccaaggacacg
gagcagatcgccgagttcctggagcagtctgtgaaagactcctgcgaggggctgatggtg
aaaaccctggacgtcgatgccacctacgagatcgccaagagatcccacaactggctgaag
ctgaagaaggactaccttgatggtgtgggcgacaccctggacctcgtggtgatcggcgcc
tacctgggccgtggcaagcgggccggccgctatgggggcttcctgctggctgcctacgac
gaggagagtgaggagctccaggccatatgcaagctcggaactggcttcagtgacgaggag
ctggaggagcattaccagaggctccaggccctggtgctgcccaccccacgctcctacgtc
cgggcggacggcgccgtggcccctgaccactggctggaccccagtgccgtgtgggaggtg
aaatgtgccgatctgtccctgtcccccatctaccccgctgcccggggcctggtggatggt
gagaaggggatctcccttcgcttccctcggtttatccgcgtccgtgaagacaagaagccc
gaggaggccaccaccagtgcccaggtggcctccctgtacaggaagcagagtcagattcag
aaccagcagggcgcggacttggactccgacccagaagatttctactag
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