Occallatibacter riparius: MOP44_16000
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Entry
MOP44_16000 CDS
T08486
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
orp
Occallatibacter riparius
Pathway
orp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
orp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MOP44_16000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
orp03019
]
MOP44_16000
Enzymes [BR:
orp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MOP44_16000
Messenger RNA biogenesis [BR:
orp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MOP44_16000
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
Flavi_DEAD
SMC_N
Motif
Other DBs
NCBI-ProteinID:
UWZ82073
UniProt:
A0A9J7BHT5
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All DBs
Position
3951841..3952974
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AA seq
377 aa
AA seq
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MSNQFSQFSISPALLAKLNHNKFTTPTPVQAGAIPPALEGRDVLATAQTGTGKTLSFLLP
IIEMLQKTPEKTANALVLLPTRELAMQVEKAYRTIRPSANDMVALVVGGLAEGPQLDTIR
RGARLIVATPGRLEDYIKRRLVKLDNIKMLVFDEVDRMLDMGFQPAIARICAELPKQRQT
LCYSATLEGQVKDVAQKYLTNPVRIEIGNVSKPAESVDLRAFEVTKENKQELLEHLLGQD
QGSFLVFVRTKHGADRLAHRLSRSGHAATQIHGDRSQSQRNSALRSFTEGRHRVLVATDV
AARGIDVKNIAHVVNYDLPKLAEDFVHRVGRTGRASRKGVASTFAMPDEKRELQKIERAL
SIQMKRYRVRSAETAVA
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
ttgtccaatcagttttctcagttctccatctcgccggcgctgctggcgaagctcaaccac
aacaagttcaccacccccacgcccgtacaggccggggcaattccgcccgctctcgagggc
cgcgacgtgctcgccaccgcccagactggcaccggcaagacgctgagcttcctgcttccc
attatcgagatgctgcagaagacccccgaaaagaccgccaacgcgctcgtcctgttgccc
acgcgcgagctcgccatgcaggtcgaaaaggcgtaccgcaccatccggccgagcgctaac
gacatggtcgcgctcgttgtcggcggcctcgcagagggtccgcagctcgacaccattcgc
cgcggcgcccgtctcatcgttgccaccccgggccgccttgaggactacatcaagcgtcgc
ctcgtcaagctcgacaacatcaagatgcttgtcttcgacgaagtcgaccgcatgctcgac
atgggcttccagcccgccatcgcacgcatctgcgccgagcttcccaagcagcgccagacc
ctgtgctactcggccacgcttgaaggccaggtgaaggacgtcgcgcagaagtacctcacc
aacccggtccgcattgagatcggcaatgtctccaagccagccgagagcgttgacctgcgt
gcctttgaagtcacgaaggagaacaagcaggaactgctcgagcacctgctcggccaggac
cagggcagcttcctcgtcttcgtgcgcaccaagcacggcgccgatcgcctcgcccaccgc
ctcagccgctccggccacgccgccacccagatccacggcgaccgctcccagtcgcagcgc
aactctgcactgcgcagctttactgagggcaggcaccgcgtgctggtagccacagacgtc
gccgcccgcggcatcgacgtcaagaacatcgcccacgtggtcaactacgacctccccaag
ctggccgaagacttcgtgcaccgcgtgggccgcaccggccgcgcctcccgcaagggcgta
gccagcaccttcgccatgcccgatgagaagcgcgaactgcagaagatcgaaagggcgctt
tcgattcagatgaagcgctaccgcgtccgctcggctgagacagccgtggcctaa
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