Oceanicoccus sagamiensis: BST96_08350
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Entry
BST96_08350 CDS
T04832
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
osg
Oceanicoccus sagamiensis
Pathway
osg03420
Nucleotide excision repair
osg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
osg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BST96_08350
03430 Mismatch repair
BST96_08350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
osg03400
]
BST96_08350
Enzymes [BR:
osg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BST96_08350
DNA repair and recombination proteins [BR:
osg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BST96_08350
MMR (mismatch excision repair)
Other MMR factors
BST96_08350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
AAA_12
AAA_11
DUF4391
Motif
Other DBs
NCBI-ProteinID:
ARN74131
UniProt:
A0A1X9NAE5
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All DBs
Position
1823555..1825738
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AA seq
727 aa
AA seq
DB search
MDVSHILNDLNDAQRQAVAAPSANLLVLAGAGSGKTRVLVHRIAWLIQAEGASPYSILSV
TFTNKAAKEMRARIDELMGSSVGGGMGAPRGMWVGTFHGIAHRLLKAHWKEAGLPQNFQI
LDSDDQLRIIKRIHKELDLDESHWPPKQSQWFINAQKDEGRRSAHIEDYGKDLNHTMMLR
VYLAYEQACERQGVVDFAELLLRAHELWLKQPAVLKHYQERFSHILVDEFQDTNTIQYAW
LRVLAGKQIPVVAVGDDDQSIYGWRGAKIENIQQYSKDFPNTQIVRLEQNYRSTSTILQA
ANAVIENNSDRLGKELWTEDGEGELISLYAGFNEQDEARFVVERIEEWVKDGNTRSTSSI
LYRSNAQSRVLEEALIRSGIPYRIYGGQRFYDRMEIKNALAYMRLMNNRDDDTAIERVIN
TPTRGIGSKTVDTVREYAREHSLSLWKSAGQIIEQKLLPNRAATAVQKFIDLINSMDVDT
DEVTLRELTDHVVSVSGLIEFHQKEKGEKGQARIENLQELVVASGQFVPEDETISPLQEF
LDSAALDAGEQQADEYEDSVQLMTLHSAKGLEFPLVFLVGMEENLFPHKMSMEESGRLEE
ERRLCYVGITRAMQKLYITYAESRRMYGNENFNSPSRFIREIPKELVQEVRLNTTISRPA
SYSPSSFQDHAIPDTGISLGQQVLHSIFGVGTVVNFEGQGPSARVQINFDDEGSKWLVVQ
YANLEAL
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggatgtatcgcatattctcaatgatttaaatgacgcccaacggcaagccgtggctgcc
ccttccgctaacttactggtgctggccggtgctggcagtggtaaaacccgcgtattggtg
caccgtatcgcctggcttattcaggccgaaggcgcatcgccctacagtattctgtcggtg
accttcaccaataaagccgccaaggaaatgcgcgcccgtattgatgaattaatgggctca
tcggtaggcgggggcatgggcgctccacggggtatgtgggtgggcacctttcacggtatt
gcgcaccgattattaaaagcccactggaaagaagcaggcctgccgcaaaatttccaaatt
ctcgatagcgatgaccagctaagaattattaaacgtatccacaaagagttagaccttgat
gagagccactggccgcccaagcaatcgcagtggtttattaatgcgcaaaaagatgagggt
cgccgctcagctcatattgaagactacggcaaagatttaaaccataccatgatgttgcgt
gtttacctggcctacgagcaggcttgtgagcgacagggcgtggttgattttgctgagtta
ttattgcgcgcccatgagctgtggttaaaacaaccggcggtgttaaagcattatcaagag
cgctttagccatattctggttgacgagtttcaggataccaacaccattcaatatgcctgg
ctgcgagtattagcgggcaagcaaattccggtagtcgcggtgggggatgatgatcagtcg
atctacggttggcgcggtgccaagattgaaaatattcagcagtactcaaaagattttccc
aatacccaaattgttcggctggaacaaaattaccgttcgacctcgacaatattacaagcg
gccaatgcggtgattgaaaataatagcgatcgcctgggtaaagaactatggaccgaagat
ggcgagggtgaattaatctctctctatgccgggtttaatgaacaggatgaagcgcgtttt
gtggtcgagcgtattgaagaatgggttaaggatggcaataccagaagcacttcgtcgatt
ctttatcgctccaatgcgcaatcacgggtattggaagaggccttgattcgcagcggtatt
ccctaccgtatttatggtggccagcgtttttatgaccgtatggaaattaaaaatgccctg
gcctatatgcggctgatgaataaccgcgatgatgatacggcgattgagcgggtgatcaat
acacctactcgcggaatcggtagcaaaacggtggatactgtacgtgagtatgcccgtgaa
catagtttgtcgttatggaaatccgccggccagattattgagcaaaaactcttgcctaac
cgcgccgccaccgcagtacaaaaatttattgatttaatcaatagcatggatgttgatacc
gatgaggtcaccctgcgtgaacttactgaccatgtggtaagtgtttccggcttaattgag
tttcatcaaaaagaaaaaggtgaaaagggtcaggcaagaatagaaaacttacaggaactg
gtggtcgcctcaggtcagtttgtgcctgaagacgaaaccatctcgccactgcaagagttt
ctggatagcgcagcattggatgccggtgagcaacaagccgatgaatatgaagacagtgtg
caattaatgaccttgcactcagcgaaagggttggagttccccttagtctttttggtgggt
atggaagaaaatctattcccccataaaatgtcgatggaagagtctggccgattggaagaa
gagcgccgcctctgttatgtgggcattacccgggctatgcaaaaactctatatcacctat
gccgagtcacggcgtatgtacggtaatgaaaactttaattcaccgtcgcgctttatccgt
gagatacccaaagaactcgtgcaagaagtacggttaaataccaccattagccgcccggcc
agttattcaccctcctcatttcaggaccatgcgattccagatacgggcattagtctgggg
cagcaagtgttacattctatttttggcgtgggcaccgtggttaattttgaagggcaggga
ccctctgccagagtgcagataaactttgatgatgaaggcagcaaatggttggttgtacag
tatgccaatcttgaggccttataa
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