Oceanicoccus sagamiensis: BST96_09235
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Entry
BST96_09235 CDS
T04832
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
osg
Oceanicoccus sagamiensis
Pathway
osg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
osg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BST96_09235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osg03021
]
BST96_09235
Transcription machinery [BR:
osg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BST96_09235
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
OrfB_IS605
Motif
Other DBs
NCBI-ProteinID:
ARN74289
UniProt:
A0A1X9NFJ4
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All DBs
Position
complement(2016732..2018534)
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AA seq
600 aa
AA seq
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MSDTEQKQSRLKTLIAKGKEQGYLTYAEVNDHLPQDISDPDQVEDIIQMINDLGIQVFEN
APDADEILLSEEDSTDDIAAAEAAAALAAVETEAGRTTDPVRMYMREMGTVELLTREGEI
AIAKRIEEGIRDVMAAVAYYPGAVQDVIDDYDKVATEERRLADILIGYLDPTDVVPPAAQ
QQQAAAADDDDDDDSPSGPDPEEAKKRFTAIRKQQNKLDKAIDKHGRYSKEAAKELQKLG
ELFKFLKLTPRVFEPLSIRVRSKLNVIRENERLIMGICIKQAKMSRKDFVKAFQGSETNF
DWLDDQIKAHKDAAPALEANRDDIIRAQRKIAFIEAQTDLTIVDIKEINRRMSIGEARAR
RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW
WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMDMPEDK
VRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTIAQPVDSATGQGLQEATKDVLGGLTA
REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRSFLDE
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgagcgataccgaacaaaagcagtctcgtttgaaaaccctgattgccaagggcaaagaa
caaggctacctgacctatgcagaggttaacgaccacctgcctcaggatatttcagacccg
gaccaggttgaagacatcatccaaatgatcaacgatttgggtattcaggtgtttgaaaat
gcccccgatgccgatgaaatcctgttgtcagaagaagactccaccgatgatatcgccgcc
gctgaagccgctgcagctctagctgccgtcgaaaccgaagccggtcgtaccaccgacccc
gtacgaatgtatatgcgcgaaatgggcacggttgaactactgacccgcgaaggcgaaatc
gccattgccaagcgcatcgaagaaggtatccgcgatgtgatggcggctgttgcctactac
cccggcgccgtacaagatgttatcgacgactacgacaaagtagccaccgaagaacgccgc
cttgccgatatcctgattggttaccttgaccctactgatgtggtaccacctgcagcccag
caacaacaagctgcggcagcggacgatgacgatgacgacgactcaccatcaggcccggat
ccagaagaagcgaaaaagcgctttacggccatccgcaagcaacaaaacaaactcgacaaa
gcgatcgataagcatggccgctacagcaaagaagccgccaaagagttacagaaactgggc
gaactgtttaagttcttaaaactgacgccgcgtgtttttgaaccgctatcgattcgcgtg
cgctcaaagctcaatgtgattcgcgagaacgaacgcttgattatgggtatctgcatcaag
caggcaaaaatgtcacgcaaagattttgttaaagccttccagggctctgaaaccaatttt
gattggttagatgaccagatcaaagcgcataaagatgcagccccggcactggaagccaat
cgcgacgatattattcgtgcccagcgcaaaattgcatttatagaagcccaaaccgattta
accattgtcgatattaaagaaattaatcgtcgcatgtcgattggtgaagctcgcgccaga
cgcgccaagaaagaaatggtcgaggccaaccttcgactagtcatttctatcgccaaaaaa
tataccaaccgtggtttgcagttcctcgatttaatccaggaaggcaatatcggcttgatg
aaagccgttgataaatttgaataccgtcgcggttataagttttcgacctatgccacctgg
tggattcgtcaggccattactcgctctattgccgatcaggctcgcacaattcgtattcca
gtgcatatgattgagacgatcaacaaactcaatcgtatctctcgtcaaatgcttcaggaa
atgggccgtgagcctacgccggaagaattaggcgagcgtatggatatgccagaagataaa
gttcgtaaggtactgaaaattgccaaagaacctatctccatggaaacgccgattggtgat
gatgaagattcacatctgggtgactttatcgaagataacactattgctcagccagttgat
tctgcaacaggtcagggcctgcaggaagccaccaaagatgtactgggcggcctgacagcc
agagaagccaaagtactgcgtatgcgtttcggtattgatatgaataccgatcacacactg
gaagaagtcggcaagcaattcgacgtaacccgtgagcgtatccgccagatcgaagccaag
gcattgcgtaaattacgccacccttcacgctctgatcatctgcgcagcttcctcgacgaa
taa
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