Oceanicoccus sagamiensis: BST96_10155
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Entry
BST96_10155 CDS
T04832
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
osg
Oceanicoccus sagamiensis
Pathway
osg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
osg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BST96_10155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osg03021
]
BST96_10155
03400 DNA repair and recombination proteins [BR:
osg03400
]
BST96_10155
Enzymes [BR:
osg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BST96_10155
Transcription machinery [BR:
osg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BST96_10155
DNA repair and recombination proteins [BR:
osg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BST96_10155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ARN74443
UniProt:
A0A1X9NKF6
LinkDB
All DBs
Position
2224370..2228593
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLNLLKQGQNEEFDSIRIGLASPEMIRSWSYGEVKKPETINYRTFKPERDGLFCAKI
FGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRDRMGHIELASPVAHIWFLKSLP
SRIGLLLDMTLRDIERILYFESYVVIDPGMTTLEKGQMLTDEQYYESMEEFGDEFEAMMG
AEAVQRLMQDIDIDQEVETLHEEIPATNSETKIKKLSKRLKLLEALQSSGNKAEWMILNA
LPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQE
SVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPTL
KLHQCGLPKKMALELFKPFIFGKLEARGLATTIKAAKKMVEREPPEVWDILAEVIREHPV
MLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEAR
ALMMSTNNILSPANGEPIIVPSQDVVLGLYWLTRARVNAEGEGMVFSDPEEVHRAYNTRK
AHLQARIKCRITEVLFDEETGERNEETKIVETTVGRVLLWQIIPEGLPFELVNNPMVKKA
ISKVLNECYRKVGLKATVIVADQLMYAGFAYSTRSGASIGINDFAIPEEKAQIIGSAEEE
VREIESQYASGLVTQGEKYNKVIDIWSRANDMVSKSMMDGISKETVTNRDGEDEQQDSFN
SVYIYADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSILQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEQDCDTHEGLLMAPVIEGGDIIETLGDRVL
GRVVAEDVLKPGTDDVIFARGTLLDEKGVIELESHSIDEVKVRSPITCETRHGLCSTCYG
RDLARGHQINVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRATAVDSIQVKQEGTIRL
HNVKLAEKSDGTFVAVSRSGELAVADHSGRERERYKLPYGAVIKVADGTDVAAGDVVTTW
DPHTHPIITEVAGKVKFSGMEEGITVNHQTDELTGLSSISVIDPAERQTAGKDIRPAVTL
VDAKGKELCLAGTSVPAHYFLPANAMVGLTDGEDIGVGDVIARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTVSFGKETKGKRRLVITPTDGSTYKGSDHYESLIHKWRT
LSVFEGENVEKGEVVSEGPPSPHDILRLKGVAELAKYISNEIQDVYRLQGVGINDKHIEV
ICRQMLRKVEITASGDSALIKGEQVQFTRVLEENERLEAEGKVPATYERLLLGITKASLA
TESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHAERKRRKDE
ELTASEEMVVSAADIEAALTEALKDEG
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttattaaatttactcaagcaaggtcaaaacgaagagtttgattctatccgg
attggtttggcctctcctgagatgattcgctcatggtcttacggtgaagtgaaaaagcct
gagacgattaactaccgtacctttaagcccgagcgtgacggtcttttctgtgccaagatt
tttggaccagtaaaagattacgaatgtctctgtggcaaatacaaacgcctaaagcatcgc
ggtgttatctgtgagaagtgtggcgttgaagtggcactggcgaaagttcgtcgtgaccgt
atgggtcatatcgaattggctagccctgttgcacatatctggtttttgaaatcattacca
agccgtatcggtttgctattggatatgacgctgcgtgatattgagcgtatcttatatttt
gaatcgtatgttgttatcgatccaggcatgaccacgcttgaaaaaggtcagatgctaacg
gacgagcaatactacgagtcaatggaagagttcggtgacgaatttgaagcgatgatgggt
gcagaagcggttcagcgcttaatgcaagatatcgatatcgaccaagaagtcgagacattg
catgaagaaattccagcaacgaattctgaaactaaaatcaaaaaattatccaagcgtttg
aagttgttagaagccctacagtcttctggcaacaaagctgagtggatgattcttaacgca
ttgccagtactaccaccggatcttcgtccgttagtacctctggacggcggtcgttttgcg
acgtccgatttgaacgatttataccgtcgcgttatcaaccgtaacaaccgtcttaagcgt
ctattagaccttaatgctcctgatatcatcgtacgtaacgaaaagcgtatgttgcaggaa
tctgttgatgcactattagataacggtcgtcgcggtcgtgcgattactggttctaacaag
cgcccgctaaaatctttggctgatatgatcaaaggtaagcagggtcgtttccgtcagaac
cttcttggtaagcgtgttgattactctggccgttccgtaattgttgttggtcctactctt
aagttgcaccagtgtggtctgcctaagaaaatggcgctggaattatttaagcctttcatt
ttcggtaaattagaagcccgtggtttagcgactacgattaaagcggctaagaaaatggtt
gagcgtgagccgccagaagtttgggatattcttgcagaagttatccgtgaacatcctgtt
atgcttaaccgtgcaccaacacttcaccgtttgggtatccaggcctttgaaccggtactg
atcgaaggtaaagcgattcagctacacccgctggtatgtgcggcttataacgctgacttt
gatggtgaccaaatggcggtacacgtaccgttgactatcgaagcgcagcttgaagctcgt
gccttgatgatgtctaccaacaacattctttctccagcgaacggtgagccgattatcgtt
ccttcgcaggatgttgtattgggtctgtactggttaacccgagctcgtgttaatgctgaa
ggcgagggcatggtgttctcggaccctgaagaagtgcatcgcgcttacaatacccgcaag
gctcatttgcaggcacgtattaagtgtcgtatcaccgaagtcttgttcgatgaagaaacg
ggtgagcgcaacgaagaaaccaaaattgttgagactactgttggtcgtgtgctgttatgg
cagatcattccagaaggtcttccctttgagttggttaacaacccaatggttaaaaaggcc
atctctaaagttttgaacgagtgctaccgtaaggtcggtttgaaagcgaccgttattgtt
gctgaccaactaatgtatgccggttttgcttactcaactcgttctggtgcttcaatcggt
attaacgattttgctatccctgaagaaaaagcccagattatcggcagcgccgaagaagaa
gttcgtgaaatcgaatctcagtacgcttccggtctggtaacacagggtgagaaatacaat
aaggttatcgatatctggtcacgtgccaacgatatggtttccaagtcgatgatggacggt
atctcgaaagagactgtgaccaaccgcgacggtgaagatgagcagcaggattcatttaac
tctgtttatatctacgccgactccggtgctcgtggtagcccagcccagattcgtcagttg
gccggtatgcgtggtctgatggccaagccagatggctcgattatcgaaacgccgattacg
gcaaacttccgtgaaggtctaagtattcttcagtactttatttcgactcacggtgctcgt
aaaggtttggcggataccgcactgaaaacagctaactcgggttacctgactcgtcgtctg
gttgatgttgctcaggatctggttgttactgagcaggattgtgacacccacgaaggtcta
ttaatggcgccggttattgagggtggcgatattatcgaaactctgggtgatcgtgtgctt
ggtcgtgtcgttgcagaggatgtcctaaagccaggtacggatgacgttatctttgcccgc
ggcacattgctcgacgagaaaggtgttatcgaattagaaagccacagtatcgatgaagtg
aaagttcgttcaccgattacctgtgaaactcgccacggtctatgttctacctgttacggt
cgtgacctggctcgtggtcatcagatcaatgttggtgaggcggttggtgttatcgctgct
caatccattggtgagcccggtactcagttaaccatgcgtaccttccacattggtggtgcg
gcatcgcgggcaactgcggttgatagtatccaggttaagcaggaaggtacgatccgttta
cacaatgttaagttggctgaaaagtcagacggtacttttgttgcggtaagtcgttccggt
gaattagcggttgctgaccacagtggtcgtgagcgtgagcgttataagctgccatacggt
gccgtgattaaagtggccgatggtactgatgttgccgctggcgatgtcgttaccacttgg
gatccacacacccaccccatcattactgaagtggctggtaaagttaagttcagtggtatg
gaagaaggcattaccgttaaccaccagactgatgaattaaccggtctaagctctatctcg
gttatcgatcctgctgagcgccaaacggctggtaaagatatccgtcctgcggtaactctg
gttgatgcaaaaggtaaagaactgtgtctggccggtacttcagtacctgcacactacttc
ctgcctgcaaacgccatggttggtttaaccgatggtgaagatatcggtgttggtgatgtt
atcgcccgtatcccacaggagagttcaaaaactcgtgatattaccggtggtctgccacgt
gttgctgacctgttcgaagcccgtaagccgaaagagcctgccattcttgcagaaatctcc
ggtacggtttcattcggtaaagaaaccaaaggtaagcgtcgtctggtaattacaccaacg
gatggctctacttataaaggttctgatcactacgaatcactgatccacaaatggcgtaca
ttaagcgtgtttgagggtgagaacgtagagaagggtgaagttgtttctgagggcccacca
agcccgcacgatatcctgcgtttgaagggtgttgcggagctggccaagtacatcagcaac
gaaatccaggacgtatatcgtctacagggtgttggtatcaacgataagcacatcgaggtt
atttgccgtcagatgctgcgtaaagttgaaatcaccgcttctggtgattcagccttgatc
aagggtgagcaggtgcaatttacccgcgtccttgaagaaaatgagcgtctggaagcggaa
ggtaaagtaccggccacttacgagcgtctattactgggtattaccaaggcctctctggca
actgagtcgtttatctcggctgcatcgttccaggagaccacccgtgtactaaccgaggct
gccgttaccggtaagcgcgattatctacgtggcttgaaagaaaacgttgttgtgggtcgc
ttgatccctgcgggtactggcctggcataccatgccgagcgtaagcgccgtaaggatgaa
gagctgacagctagtgaagaaatggtagtaagtgcagctgatatcgaggcggcattgact
gaagcattgaaggatgagggctaa
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