Oceanicoccus sagamiensis: BST96_11430
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Entry
BST96_11430 CDS
T04832
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
osg
Oceanicoccus sagamiensis
Pathway
osg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BST96_11430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osg03019
]
BST96_11430
Enzymes [BR:
osg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BST96_11430
Messenger RNA biogenesis [BR:
osg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BST96_11430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
ARN74676
UniProt:
A0A1X9NAN3
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All DBs
Position
2504158..2505534
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AA seq
458 aa
AA seq
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MIGKLFGKKKTTANSGESAPADTQSDRKPSASKSGNKKPGNQQKSSRSNRRNRKPKPEAA
PWTIDQFPVPAMEGKTRFHDLGLDERLMHGIADLGFEYCSPIQAGVLPQTLQGHDAIGKA
QTGTGKTAAFLVTIIQDLLSNPITDERYAGEPRALIIAPTRELVVQIGEDAKNLTKYAGL
NVATLIGGMDYNKQLNQLKGSLVDIVVATPGRLLDFQSRRDLFLDQVEILVIDEADRMLD
MGFIPQVRRIVRSTPNKDHRQTLLFSATFTPEVLSLTEQWTYEPFSLEIEPESVATDTVD
QKVYIVAADEKLALLKNIIKLPEAKSVIVFANRRDQTRKLYEGLRKEGVRCGILSGEIPQ
NKRSQTLARFKEGGIQVLVATDVAGRGIHVDGISHVVNYTLPEDPEDYVHRIGRTGRAGA
TGTSISFACEDDAFLLAPLEEMLGNKLPCEQPPLELLS
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
ttgataggcaagctttttggtaagaagaaaaccaccgcaaatagcggtgagtccgccccg
gcagatacacagtctgaccgtaaaccctctgcgtctaaatcaggtaataagaagcctggg
aatcagcaaaaatcttcccgcagcaatcgccgtaatagaaagcccaagccagaggctgct
ccatggactattgatcagtttcctgttccagcaatggaaggtaaaacccgtttccacgat
ctgggtctggatgagcgactaatgcatggcattgccgatttagggtttgaatactgctct
cccattcaagctggtgttttaccgcagacattgcagggccatgatgccattggtaaggcg
caaaccggcactggtaaaacggcggcttttttggtgaccattatccaggacttgttatcc
aacccgattaccgatgagcgctatgccggtgagcctcgggcgctgattattgcaccgacc
cgtgagttggtggtgcaaattggtgaagatgccaagaatctgaccaaatatgccgggctg
aatgtagcgaccttgattggtggtatggattacaacaagcaacttaatcagctaaagggg
tcgctggtcgatattgtagtggccacgccgggtcgcttattggactttcaaagccgccgc
gatttgtttttggatcaggtagaaattttggtcatcgatgaagctgaccggatgctggat
atgggttttattccccaggtgcgtcgcattgtgcgcagcacacccaataaagatcatcgc
caaacgctgttgtttagtgcaacgtttacccctgaagtattaagtcttactgagcagtgg
acttatgagcccttctcgttggaaatagagccggaaagtgttgccaccgataccgtggac
caaaaagtgtatattgttgccgctgatgaaaagctggccctgttaaaaaatatcatcaaa
ctgccagaggcaaaaagcgtgattgtttttgccaaccgccgtgaccaaacccgcaagctt
tatgaaggtctgcgtaaagagggtgttcgctgtggtattttgtcgggagaaattccgcaa
aataaacgctcacaaactctggcacgttttaaagagggtggtatacaggttttagttgct
actgatgtagcggggcggggtattcatgttgatggtattagccatgtggttaattacaca
ttgcctgaagacccggaagactatgttcaccgtattggtcgtaccggcagagctggggcg
acaggtacttctatcagctttgcctgtgaagatgatgcctttttactggcacccttagaa
gagatgttaggtaataaacttccttgtgagcaaccgcctctggagcttttgagttag
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