Oceanicoccus sagamiensis: BST96_11800
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Entry
BST96_11800 CDS
T04832
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
osg
Oceanicoccus sagamiensis
Pathway
osg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BST96_11800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osg03019
]
BST96_11800
Enzymes [BR:
osg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BST96_11800
Messenger RNA biogenesis [BR:
osg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BST96_11800
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HI1480
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ARN74741
UniProt:
A0A1X9NC44
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All DBs
Position
2580761..2582113
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AA seq
450 aa
AA seq
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MSFDSLGLSEPILEAIKKQGYDSPSPIQAKAIPAVVEGHDVMAAAQTGTGKTAGFTLPIL
ERLSGGRSAASNQARALILTPTRELAAQVGASVETYGANLPLRSTVVFGGVKINPQMMKL
RKGVDILVATPGRLLDLYNQKAVKFDHLEVLVLDEADRMLDMGFIHDIKKILRLLPKQRQ
NLLFSATFSNDIRNLAKGLVHNPVEISVSPPNTTVESIEHWIYSVDKNKKSPLLIELIKA
NQWPQVLVFSRTKHGANKLAKQLTGAGLNAAAIHGNKSQGARTRALAEFKSGEVQVLVAT
DIAARGLDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGASGMAVSLVCADEFKQLSDIER
LIGELLPRKIAEGFEPVHALPESRLNTKPHKPKKPKKPKTGHRDGQRSGENAQGHKKDQR
QGAGQQQKQGNGNARPANKRRRRRPASGNV
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgactccctgggtttatctgaacctattctggaagcgattaaaaagcagggc
tatgacagcccgtctccgatacaagccaaggcaatccctgcggtggttgaaggccatgac
gtgatggctgcggcgcaaaccggtaccggaaaaacagccggttttaccctgccaatttta
gaacgtcttagcggtggtcgcagcgccgcctcaaaccaggccagagcactgatcctgact
cctactcgggaattggcagcccaggtgggcgccagcgttgaaacctatggcgctaattta
ccactgcgttccaccgtagtttttggcggggtaaaaatcaatcctcaaatgatgaagctg
cgcaaaggtgttgatatattagtggcaacgccgggtcgcttattagatttatacaaccaa
aaagccgttaaatttgatcacttggaagtgctggtcttggatgaagccgaccgtatgttg
gatatgggttttatccacgatattaaaaaaatcctgcgtctattacccaagcagcgacaa
aacctattattctccgccactttctccaacgatatccgtaatctggccaaaggtctggtg
cataacccggtagagatttcggtaagcccacctaacaccactgtagaatctatagagcac
tggatttactcggtagacaaaaataaaaagtcgccgctgttgatcgaacttatcaaagcc
aaccaatggccgcaggtactggtattttcacgcaccaagcacggtgccaataaattagcc
aagcaattgaccggtgccggtcttaatgccgcagctatccatggcaataaaagccagggt
gctcgtacccgagctctggcagagtttaaaagtggtgaagttcaagtgttagtggctacc
gatattgcggcccgaggtttggatatcgatcagctacccaatgttgttaactttgatttg
cccaatgtgcctgaagattatgttcaccgtattggtcgtactggccgggcaggggccagt
ggtatggcggtctccctggtgtgtgctgacgagtttaaacaactgtctgatatagaacgg
ttaattggtgagctgctaccgagaaaaatcgctgaaggttttgagcccgtccatgcactg
cctgagtcgcgcttaaataccaaacctcacaagcccaagaaacccaaaaaaccgaaaacg
ggccaccgggatggccagcgttccggtgaaaacgcccagggccataaaaaggaccagcgc
caaggtgccgggcagcagcaaaaacagggcaatggcaatgccaggcccgccaataagcgc
cgcagacgcagaccagctagcggcaacgtctaa
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