Oceanicoccus sagamiensis: BST96_15530
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Entry
BST96_15530 CDS
T04832
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
osg
Oceanicoccus sagamiensis
Pathway
osg03410
Base excision repair
osg03430
Mismatch repair
osg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
osg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BST96_15530
03430 Mismatch repair
BST96_15530
03440 Homologous recombination
BST96_15530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
osg03400
]
BST96_15530
DNA repair and recombination proteins [BR:
osg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BST96_15530
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BST96_15530
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BST96_15530
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF6315
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
ARN75398
UniProt:
A0A1X9NBI2
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All DBs
Position
3378754..3380487
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AA seq
577 aa
AA seq
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MQKIIKRRPKAENRFSDVLPPLLQQIYSARGIASDEDIQTDLSGLLTPQSLKGLPEAIDL
LVTALEQQQRLLVVGDFDADGATSSALAVLALTAMGAESVNFLVPNRFEYGYGLTPEIVA
VATQFSPDLIITVDNGISSIDGVKAANDAGIKVLVTDHHLPGTTLPAAAAIVNPNQPGCH
FDSKNLAGVGVIFYLMSALRSALRERQWFAQRQIQEPAMADYLDLVALGTVADVVPLDKN
NRILVAQGIRRIRAGRTRPGIKALLAVGKRNAERLVSSDLGFAVGPRLNAAGRLDDMTLG
IQCLLSDDPYQAGEIARQMDELNQDRKSIEGSMQREAMQSLKALKVEEGNMPYGLCLYDA
NWHQGVIGILASRIKDRYHRPVIVFADADEEGVIKGSARSISGLHIRDALDAVASRHPGL
LSKFGGHAMAAGMSLAKDQYPLFEQAFDEEVRRQLSDDDLQAVLASDGALAADSFNLELA
QLLRDAGPWGQHFPEPLFDGEFLLVQQRILQDKHLKLVLALEEQPQQPLDAIAFNVDMAL
WKDQSIDKVRLVYKLDVNEFRGNQTLQLMVEYIEPLL
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaataataaaacgccgacccaaagcagaaaatcgcttttctgatgtattaccc
cccttgctgcaacaaatctactccgccagaggtatagcctctgatgaagacatacaaacg
gatttatcgggcctgttaacaccgcaatccttaaagggcttgcctgaagctattgatctt
ttagtcaccgccctagagcaacagcaacgcctgctggtggtgggtgattttgatgctgac
ggcgccaccagtagcgcattggcggtattggccttaacggcaatgggggctgagtcagtt
aacttcttagtgcctaaccgttttgaatatggctatggcctaacaccggaaattgttgcg
gttgccacacagttttcaccggacttaattattaccgtggacaacggtatctcaagtatc
gacggggttaaagcggccaatgatgccggtattaaggtcttggtaactgaccatcattta
ccgggcacaaccttgcccgccgcagcggctattgttaaccctaaccagcccggctgtcac
tttgacagtaaaaacctggccggagtcggtgttattttttatctgatgtcagcactgcgt
tcagccttaagggagcggcagtggtttgcgcagcgtcagattcaagaacccgcgatggcg
gattatttggatttagtggctctgggtaccgtcgcggatgttgttcctctggataaaaac
aaccgtattttggtcgcgcagggtattcgccgtattcgcgccggtagaacccgtccgggt
attaaggctttactggcggtcggtaagcgcaatgcggagcgcctggtcagcagtgattta
ggctttgcggttgggccgcgtttaaatgcagctgggcggctggatgatatgacactgggg
attcagtgtttattaagcgatgacccttatcaggccggtgagattgcccgccagatggat
gagttaaaccaggaccgtaaatcgattgaaggcagtatgcagcgtgaagccatgcagagc
ttaaaggcgcttaaggtggaagagggcaatatgccctatggcttatgcctctatgatgct
aattggcatcagggtgttattggtattctggcttcgcgcattaaagatcgctatcaccgc
cctgttattgtttttgccgatgccgatgaagagggtgtgattaaaggctctgctcgctcg
atcagcggtttacatatccgtgatgctttagatgcggtagcctcccggcatccggggcta
ctcagtaaatttggcggccatgccatggctgccggtatgagtctggctaaagatcaatac
ccgctatttgagcaggcctttgacgaggaggtacgccgacagttaagcgacgacgatttg
caggcagtattagccagtgatggtgccttggcggcagactcctttaatctggagttggcc
cagttactgcgtgatgcgggcccttggggacagcactttcctgagcccttatttgatggt
gagtttctactcgtgcagcagcggattctgcaagataaacatttaaaactggtgctggct
ctggaagaacagccgcagcagcctttggatgcgatcgcgtttaatgttgatatggcgtta
tggaaagatcagtcgatcgataaagtcaggctggtctataaactggatgttaatgagttt
aggggcaatcagacgctacaactgatggtggagtatatcgagcctttattataa
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