Oceanicoccus sagamiensis: BST96_17655
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Entry
BST96_17655 CDS
T04832
Name
(GenBank) RNA helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
osg
Oceanicoccus sagamiensis
Brite
KEGG Orthology (KO) [BR:
osg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
osg03009
]
BST96_17655
Enzymes [BR:
osg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BST96_17655
Ribosome biogenesis [BR:
osg03009
]
Prokaryotic type
rRNA helicases
BST96_17655
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ARN75773
UniProt:
A0A1X9NPF6
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All DBs
Position
complement(3900094..3901401)
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AA seq
435 aa
AA seq
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MSLLTDLPLHKQLFKALDKLGFTEATKVQAAAIPAAISGKDLLVSAQTGSGKTAAFLLPI
LHRLLEQDRPNSGTRALILLPTRELALQTKKHFEQLAAFTYLKCGLIIGGEAYKHQVATL
RKNPEVLIATPGRLVDHIEKGNPDFRDLEVLVLDEADRMLDMGFAIDMHTISEYSNPERQ
NLLFSATLDSKGMDRVIATFSDPLSIEIDSHRQQHSHIIQQMVLADDIKHKEKLVDAIIS
EEAAKKVFIFCNKRVQCEQLSHYLKYKKRKVNFLHGDIAQNDRKQIMNSFRQGGLEILVA
TDLAARGLDINNVDLVINFAVAHSGDDHVHRVGRTGRAGNDGKAISLVNADEWNQMSSIE
RYLKIRFERRVIKDLKAKYTGPKKLKKSGKSAGSKKKKLDSKKPKANQPKTHKKTSGAKK
VKRVTGDGFDVIRKK
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
ttgtcattacttaccgacttaccactgcataaacagctatttaaagcactggataagctg
ggctttacggaagccaccaaggtgcaggcagcagctattcccgcagctatctctggtaag
gatttattagtatcggcacaaaccggtagtggtaaaaccgccgcctttctactgcccata
ctgcaccgcttactcgagcaggaccggcctaatagcggtacccgggcattgattctgttg
cccacccgcgaactggccctgcaaaccaaaaagcattttgagcaattggcagcctttacc
tatttaaagtgtggcttgattataggcggtgaagcctataaacatcaggtagctacacta
cggaaaaaccctgaggtgttaattgctacccctggccgtctggttgaccatatagaaaag
ggcaaccctgattttagagatcttgaagtactggtactggatgaagcggaccgtatgctg
gacatggggtttgccattgatatgcataccatttcagaatacagcaaccccgagcgccag
aacctgttattttcagcgacgctggactcaaaaggtatggatagagtgatagccactttt
tccgatccgctatccatagaaatagactctcaccgccagcagcatagccatattatccag
cagatggtattggccgatgatatcaagcataaagagaaattagttgacgcgattattagt
gaagaagcggctaaaaaagtctttatcttctgcaataagcgggtgcagtgtgagcaacta
agtcactatcttaaatataaaaagcgcaaagtgaattttctgcatggcgatatcgcccag
aatgaccgcaagcagattatgaacagctttcgacagggcggcttagaaatactggtcgct
acggatttagcagcccgtggtctggatattaataatgtggatttagtcattaattttgcc
gttgcccattccggtgatgatcatgtgcatcgagtgggtcgcacgggcagggcagggaat
gacggtaaggcgatcagcttggttaacgccgacgaatggaatcaaatgtccagtattgag
cgctatttaaagattcgttttgagcgccgggttattaaagatttaaaggccaaatatacc
ggccccaaaaagcttaagaaatccggtaaatctgccggatcaaaaaagaaaaaattagat
agcaaaaaacctaaagccaatcagcctaaaacccataaaaagaccagcggcgccaaaaaa
gtaaagcgagtaaccggcgatggctttgatgttattcgtaaaaagtag
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