Oenococcus sicerae: DLJ48_01390
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Entry
DLJ48_01390 CDS
T05833
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
osi
Oenococcus sicerae
Pathway
osi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DLJ48_01390 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osi03019
]
DLJ48_01390 (rnr)
03016 Transfer RNA biogenesis [BR:
osi03016
]
DLJ48_01390 (rnr)
Enzymes [BR:
osi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DLJ48_01390 (rnr)
Messenger RNA biogenesis [BR:
osi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DLJ48_01390 (rnr)
Transfer RNA biogenesis [BR:
osi03016
]
Prokaryotic type
tRNA degradation factors
DLJ48_01390 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
CSD
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
QAS69273
UniProt:
A0ABX5QKH6
LinkDB
All DBs
Position
complement(263100..265259)
Genome browser
AA seq
719 aa
AA seq
DB search
MSNQFASENFINGTFVANAKGFGFVKTDEGQDDLFIGRSNTNLAMQSDNVLASIIHPGKD
GRVPEGKIEKILDHANQQVVGIFRSGVDRNVLPSILDPDDFLGTITFIDEKLQEYTYLVD
KKGLQAHDRDSVTASTGQFPTVDQPKLLIGSVTNVIGRSDAPGVDILEIVYSLKIPSVYP
DKAQAQARAIPQTIDVKAALADGRPDFRDQPLITIDGADTKDIDDAVVVWKMANGHYHLG
VHIADVSNYVPEGTPLDEEAYKRGTSVYLTDRVIPMLPTEISNGIASLNPNEDRLAMSCE
MEIDERGQIVHHRIQPSIIRSHARMTYDSINKILAGDVAETAKYADLSDMIHQMGDLHQI
LAKMRTARGAIEFDSDEAEIIIDKKGHPTDVIVRDRGIGERMIESFMLAANETVAEHFDR
LHVPFLYRVHEVPEGDKVTNFFEFMGAIGHPIKADPKNLKPKDFQAALAAVAGLPEEMMI
QTMMLRATKQAHYSPLPVGHFGIAAKFYTHFTSPIRRYPDLVVHRLIKHYAKFGTGPDST
AAVRDKLPQIGIDTSARERRSVDAERATNDMKFAEYMEDHIGAVYDGVVNSALKFGLFIT
LPNTIEGLVHISTMVDDVYQYDETRQALIGRTHHHIFTIGQKVKIQVVNSNKETRKIDFK
LIDPQTAPMTKIRLAADLQRRSFSHNNAGGRNQHRPGDGRTQKGAYKSTGKYHLKEGRR
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatcaattcgcttcagaaaactttattaacggcacttttgttgccaatgccaag
ggcttcggtttcgtcaagactgatgaaggtcaagatgatttgtttatcggccggtctaat
acgaatttagccatgcaaagcgataatgtcctggcttcgatcattcatccaggcaaagat
ggccgagtgcctgaaggcaaaattgaaaaaattcttgatcacgccaaccagcaggtcgtt
ggcatttttcgttcgggcgttgatcgcaatgtgctgccgtcaattctagaccctgatgac
tttcttggtacgatcacatttatagatgaaaaactgcaggaatacacttatctcgttgac
aaaaaagggctgcaagctcatgatcgcgattctgtgacggcttcgactggccaatttccg
acagttgatcagccgaaacttctgatcggttcagtcacaaacgtgatcggtcgttctgat
gcgccgggcgttgatatcttggagattgtttatagcctgaaaattccaagtgtttatcca
gacaaagcacaagcacaagcacgcgcgattccgcaaacgatcgatgtcaaagcggctctg
gctgatggccggccggattttcgcgaccagcctttgatcacgatcgatggtgctgatacg
aaagatatcgatgatgcagttgttgtttggaaaatggccaatggtcattatcatttaggc
gtccacattgccgatgtttcaaattatgtgcctgaaggaacgccgctggacgaagaagct
tataaacggggtacctctgtctacttgactgatcgcgtgattccgatgctgccaacagaa
atttcaaatggtattgcttctttaaatcctaacgaggaccgccttgccatgtcttgtgaa
atggagatcgatgaacgcggacagatcgttcaccataggatccagcctagtattattcgt
tcacatgctcgtatgacctatgattcgatcaataaaattttggccggtgatgtcgcagag
acggctaaatacgctgatttatcagatatgatccatcaaatgggcgatctgcatcagatc
ttggctaaaatgcgtacggctcgtggtgcgatcgaatttgatagtgatgaagctgaaatc
atcattgataaaaaaggtcacccaacggatgtgatcgtacgtgatcgcggtattggcgaa
cgcatgatcgaatcctttatgcttgctgccaatgagacggttgccgaacactttgatcga
ttgcatgtcccttttttgtaccgtgttcatgaagtgcctgaaggtgacaaagtgaccaat
ttctttgaatttatgggagcgatcggtcatccgatcaaggctgatccgaaaaatcttaaa
ccgaaggattttcaagcggccttagcggctgttgctgggctgccagaagaaatgatgatt
caaacgatgatgctaagagccactaaacaagctcactattcgcctttgccagtgggccac
ttcggcattgcagctaagttttatacgcattttacatctccgattcgtcgatatcctgat
ttggtcgttcatcgtttgatcaaacattatgctaaattcggtactggtccagattcaacg
gccgcggttcgtgacaaattacctcagatcggtattgatacttcagctagagaacgccgc
tcggttgatgctgagcgtgcgactaatgacatgaagtttgctgaatatatggaagaccat
atcggtgctgtctatgatggtgtcgttaattcagcactgaagttcggactgtttatcaca
ctgcccaacacaattgaaggacttgttcacataagtacgatggttgatgatgtttaccaa
tatgatgaaacacgtcaggcactgatcggccgcactcatcatcacatctttacgatcgga
caaaaggttaagatccaggttgtcaattcaaacaaagagacgcgcaaaattgatttcaaa
ttaattgatccccaaaccgcaccgatgacaaaaatccgtctggcagccgatctccaacgc
cgtagtttcagccataataacgctggcggtcgtaaccagcaccggcctggcgatggccgc
actcaaaaaggtgcttataagtcaaccggtaaatatcatttgaaagagggtcgccgctga
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