Oenococcus sicerae: DLJ48_02565
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Entry
DLJ48_02565 CDS
T05833
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
osi
Oenococcus sicerae
Pathway
osi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DLJ48_02565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osi03019
]
DLJ48_02565
03009 Ribosome biogenesis [BR:
osi03009
]
DLJ48_02565
Enzymes [BR:
osi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DLJ48_02565
Messenger RNA biogenesis [BR:
osi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DLJ48_02565
Ribosome biogenesis [BR:
osi03009
]
Prokaryotic type
rRNA helicases
DLJ48_02565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QAS69481
LinkDB
All DBs
Position
complement(496435..498015)
Genome browser
AA seq
526 aa
AA seq
DB search
MKFEEFGLSPELLSTVKKHGYDEATPIQEKTIPLILQGVDVIGQAQTGTGKTAAFGLPIL
EEVDPKDPKIQALIISPTRELAMQTEEELSKLGSDKHVKTQVVFGGYDIRRQIQALKQHP
QVLVGTPGRLIDHLNRHTIDFRSIKTLVLDEADEMLNMGFLDDIETIVHYTPDDRQTLLF
SATMPEDIKKIGVKFMEDPEEIHIASKGLTIDLVDQYLVNTREFEKFDAMTRLFDVQQPE
LAIVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQSARMRTLRSFKKGELQFLVATDVAA
RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGRHGVSVTFAVRGEIDYLRAIEKLINK
RMAALKPPTAEEAHIARLKNAKAETYAVLDKTTADSVEDEATEIAAKYDSKILAAALLSA
LSKDEERTRPVDIAQEKPLPRRHGGSSDRGGHGYRGNSSRSNDRRGGGSHSNGRGRGDRR
GGFKEEFVIDRGHKPADRRDQHIQARPKGVAKAAPKKREFKIIKKS
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttgaagaatttggacttagtccagagcttttgtctacggtcaaaaaacacggc
tacgatgaagcgaccccgattcaggaaaaaacgattccactgattttgcaaggagtcgat
gtcatcggacaggcacaaaccggaactggcaaaacagctgcctttggtttacccatatta
gaagaagttgatccaaaagacccgaagatccaggccttaattatcagtccgacccgtgag
ctcgcgatgcagactgaagaagaattgagcaagcttggttctgataaacacgtgaaaaca
caagttgtttttggtggctatgatatccgccgtcagatccaagctttaaaacaacatccg
caagtattggtcggcacacctggtcgtttgattgatcatttgaaccgccacacgattgat
tttcgttctatcaaaactttggttcttgatgaagctgatgaaatgcttaacatgggcttt
ttggatgatatcgaaacaatcgttcactatacgccggatgatcgtcagactttgcttttt
tcggctacaatgccggaagacattaaaaaaattggtgtcaaattcatggaagatcccgaa
gaaattcacattgcttctaagggtttgacaatcgacttggttgatcaatatttggtcaac
acaagagaatttgaaaagtttgatgcgatgactcgcttatttgatgttcaacagccagag
ttggcgatcgtctttggtcgtacgaaacgccgtgtcgatgaactgaccaaagctttgcag
ctgcgtggttataaagctgctggaattcatggtgatttagatcaatctgctagaatgcgg
acgctgcgttcctttaaaaaaggtgaattgcagttcttggttgcaaccgatgtagctgcc
cgaggcttggatatttctggcgtgacccatgtttataactacgatattccgcaggatccg
gattcttatgttcatcgtatcggtcgtaccggtcgtgctggccgtcatggtgtctcagtg
acatttgcggtccggggtgagattgattatctgcgtgccatcgagaaattgatcaacaag
cgtatggctgctttgaagccgcctacagctgaagaggcgcacatcgcccgcttaaagaac
gcgaaggctgagacttatgctgttttggataagacgacagccgattcagttgaagatgaa
gcaactgagatcgctgcaaaatatgacagcaagattttagctgctgccttgttgagtgct
ttgtcaaaggatgaagaaagaactcgtccagttgatattgcacaagaaaagcctctgccg
cgtcgtcatggtggttcttctgatcgtggtggtcatggttatcgcggcaacagcagtcgt
tctaatgatcgtcgtggtggcggtagccatagtaatggtcgcggtcgtggtgatcgtcgc
ggtggttttaaagaggaatttgtgatcgatcgtggtcacaaacctgccgaccgtcgggat
cagcacattcaggctcgtccgaaaggagttgctaaagcagccccgaagaagcgcgaattt
aaaattattaaaaaatcatga
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