Octopus sinensis (East Asian common octopus): 115210320
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Entry
115210320 CDS
T07665
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
osn
Octopus sinensis (East Asian common octopus)
Pathway
osn03013
Nucleocytoplasmic transport
osn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
osn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115210320
03015 mRNA surveillance pathway
115210320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osn03019
]
115210320
Enzymes [BR:
osn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
115210320
5.6.2.5 RNA 5'-3' helicase
115210320
Messenger RNA biogenesis [BR:
osn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115210320
mRNA cycle factors
Common to processing body (P body) and stress granule
115210320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
Viral_helicase1
NPHP3_N
DEAD
NAT10_TcmA_helicase
nSTAND3
UvrD-helicase
ATPase
SRP54
AAA_16
AAA_22
PhoH
Motif
Other DBs
NCBI-GeneID:
115210320
NCBI-ProteinID:
XP_029634704
UniProt:
A0A6P7S8P8
LinkDB
All DBs
Position
LG4:complement(90090493..90160801)
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AA seq
1131 aa
AA seq
DB search
MSVDTYGPNSQTLSFLDTEETDHLGADTQGSDFYFTDFTLPSQTQSQTQASQLDGGHSQS
QIDVLEGPFQNGLDKNVGAINQGVGELNFEEDEEEQFYMKDLPKHACAYCGIHDPACVVY
CNTTKKWFCNGRGNTSGSHIINHLVRAKAKEVTLHKDGPLGETVLECYNCGCRNVFLLGF
IPAKADSVVVLLCRQPCATLSSLKDMNWDPSQWQPLIQDRQFLSWLVKVPSDQEQLRARQ
ISAQQINKLEELWKENPEAKLEDLEKPGVDEEPQQVLLRYDDAYQYQNIFGPLVKLEADY
DKKLKESQTQDNIVVRWDVGLNKKRIAYFRLPKANEEMKLMHGDELRLRYLGELHKPWSG
VGHVIKIPDNYSDEVAIELKSNAGVPVECTLNFVVDFVWKSTSFDRMQAALKTFAVDETS
VWGYIYHKLLGHEVEDAVIKCQLPKRFTAAGLPELNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVYHLVKQGNGPVLVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAIDSPV
SFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKKQCEKELLQHADVICCT
CVGAGDPRLAKMQFRSVLIDESTQATEPECMIPVVLGCKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAAERTRKTLD
FPWPQLDKPMFFYTTAGQEEISSSGTSYLNRTEAANVEKIATRFLRSSIRPEQIGIITPY
EGQRAYVVQYMQYSGALNKKLYQEIEVASVDAFQGREKDFIILSCVRSNEHQGIGFLNDP
RRLNVALTRARYGIIIVGNPKVLSKQPLWNHLLTYYKEQKCLVEGALNNLKESLIQFSKP
RKLVNTTNPGGRFMSNTMFDAREVLIPGSVYDRCGSKPAGKGFNSNFSTGVNIRDPMVRP
HDQLSYIASDRSFAANSLNLPVPVGMFMSPVPHFQNQQGQQQQQQTSGNAVGRGSGLRKN
RPGRQKPPRYSTTQQQNVTQQNVAQASQSQASQEVSQAFSQGPLTQGQLSMSQPFQMSQP
GLSGLSQPELSQDSFLGEDFKSQADGLLSQDSTYQGDRMFYASQLSQGPFH
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgacacgtacggcccaaattctcaaaccctttccttcttagacactgaagaa
accgatcatttgggtgccgacacacaaggatcagacttttactttacagacttcacgctg
ccctctcagactcaatcccagacgcaggcttcacaattggatggaggacacagccagagc
cagattgatgttcttgaaggaccatttcagaatggactggataaaaacgtgggagcaatc
aaccaaggcgttggtgagctcaattttgaagaagatgaggaagaacaattttatatgaag
gacttaccaaagcatgcttgcgcgtactgtggaattcatgatcctgcctgtgttgtgtac
tgcaataccacaaagaaatggttttgtaatggacgaggcaacacctctggaagccatatt
ataaatcaccttgtgcgggctaaagccaaagaggttaccctacataaagatggccctctt
ggagaaacagtcctggaatgttacaattgtggctgccgaaatgtttttctgcttggcttc
atcccagccaaagccgattctgttgtggtgctactctgtcgtcagccctgtgctactttg
agcagtttaaaggacatgaattgggatccaagtcagtggcagcccctcatccaagatcga
caatttctctcttggcttgtaaaagttccatcggaccaagaacaattgagagctcgtcag
atatctgcccagcaaattaataaactggaagagctctggaaggaaaatcctgaggctaaa
ctggaagatttggaaaagcctggagtcgatgaagaacctcagcaagttcttttacgttac
gatgatgcctatcagtatcagaatatatttggtcctttggtcaagctggaagctgattat
gacaagaaactgaaagaatctcagactcaggataatatcgttgtccgttgggatgttggc
cttaataagaagagaattgcctacttccgccttccaaaagctaatgaagagatgaagctg
atgcatggtgatgaactgcggctgcgttacctgggagaattgcacaagccttggtctggt
gttggacatgttattaagattcctgataattatagtgatgaggttgccattgaactgaaa
agtaatgctggtgtgccagtggagtgtacactcaacttcgttgtggattttgtctggaaa
tctacttcctttgacagaatgcaagctgccttgaagacatttgctgttgacgagacatct
gtatggggatacatttaccacaaactccttgggcatgaagtagaagatgcagtcatcaaa
tgtcagctacctaaaagattcacagcagctggactcccagaactcaaccattcccaagtc
tatgctgtcaaaactgtacttcagcgaccactcagccttattcaaggccctccaggaact
ggtaaaactgtgacttcagcgactattgtatatcacttggttaagcaaggtaatgggccc
gtactggtgtgtgcaccatcaaatattgctgttgaccaactgaccgagaagatacacaaa
actggtttaaaggttgttcgtctttgtgccaagagcagagaagctattgattctcctgtc
tccttcttagctctacacaaccaaattcgtaatatggacagcatgcctgagcttcagaaa
ctacaacaacttaaagacgaaactggagagttgtcttcagctgatgagaaacgttaccga
gctctcaagaaacagtgtgaaaaagaactactgcaacatgctgatgtgatttgttgcact
tgcgttggtgctggtgatcctcgattagccaaaatgcagttccgctcagttttgatagat
gaaagcactcaagctactgaaccagagtgtatgatccctgttgttttgggttgcaagcag
ttaatcctggttggtgaccattgccagttaggaccagttgtcatgtgtaagaaagcagct
cgtgctggactctcccaatcattgtttgagcgccttgtcgtgttgggcattcgaccaatt
cgtctgcaggtccaataccgtatgcatccagctctgagtgcatttccttccaacattttc
tatgaagggtcattgcaaaacggagtcacagctgctgagagaactcgaaagactctggat
tttccatggcctcagttggataaacccatgttcttctatacaactgctggtcaagaagaa
atctcaagttcaggcacatcgtatttaaacagaacggaagctgccaatgttgagaaaatt
gctacacggtttttgcgttccagcatcagacctgagcagattggaattataacaccctat
gaaggacaaagagcatatgttgtgcaatatatgcaatacagtggtgcactgaacaagaaa
ttgtatcaggaaattgaggttgcaagtgtggatgctttccaaggacgtgagaaagatttt
atcatcctgtcctgcgtccgatccaatgaacaccagggaattggttttttgaatgatccc
cgtcgtttgaatgttgccctcacaagagcacgatatggaattataattgttggcaacccc
aaagtactatctaagcaacctctttggaatcatctgcttacatattacaaagaacagaaa
tgtctggtagaaggagccctcaataacctcaaagaatcgctaatccagtttagcaaaccc
aggaaacttgttaacactaccaaccctggtggcagatttatgagcaacaccatgtttgat
gcaagagaggttctaattccaggcagtgtttatgatcgttgtggaagtaaacctgctggc
aagggatttaactctaatttttcaactggagttaatattcgtgatccaatggttcgtcct
catgaccagttgagctatattgcctctgacaggagttttgcagccaattctttgaactta
ccagtgcctgttggtatgttcatgtctcctgtgccgcatttccaaaatcagcaaggtcaa
cagcaacaacaacaaacttctggtaatgcagttggacgtggtagtggtttgcgcaagaat
cgacctggtcgccagaaaccacctcgttatagcacaactcaacagcaaaatgttactcaa
caaaatgtggcccaggccagtcaaagtcaagccagtcaggaagtctcgcaagcattttca
cagggtcccttgactcagggtcaactgtcgatgagtcagcctttccaaatgagtcaacct
ggtctttcaggactctctcaaccagaactttcacaggatagctttttgggtgaggatttc
aagtctcaagctgatggcttgctttctcaagactccacctatcaaggcgatcggatgttt
tatgcctcgcagctatcccagggtcctttccactag
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