Octopus sinensis (East Asian common octopus): 115214013
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Entry
115214013 CDS
T07665
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
osn
Octopus sinensis (East Asian common octopus)
Pathway
osn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115214013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osn03019
]
115214013
03041 Spliceosome [BR:
osn03041
]
115214013
03009 Ribosome biogenesis [BR:
osn03009
]
115214013
03016 Transfer RNA biogenesis [BR:
osn03016
]
115214013
Enzymes [BR:
osn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115214013
Messenger RNA biogenesis [BR:
osn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
115214013
Spliceosome [BR:
osn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
115214013
Complex C
U4/U6.U5 tri-SnRNP related factors
115214013
Ribosome biogenesis [BR:
osn03009
]
Eukaryotic type
Pre-60S particles
Helicases
115214013
Transfer RNA biogenesis [BR:
osn03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
115214013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Zot
Death_3
Motif
Other DBs
NCBI-GeneID:
115214013
NCBI-ProteinID:
XP_029638887
UniProt:
A0A6P7SKA9
LinkDB
All DBs
Position
LG7:complement(91549020..91586968)
Genome browser
AA seq
1024 aa
AA seq
DB search
MASTFGDDLFDIFESKADNSKVTEKKNEEEKISVDDTQRAEDLLRSIVKKREIDNPDVIS
SKKLKSDHEDFAAAAEVMPRIQVHKVETLESCTHEVALPPDEEFVPLKPPPEKPAQEFPF
ILDPFQKEALLCLENNQSVLVSAHTSAGKTVVAVYAIAMSLQKKQRVIYTSPIKALSNQK
YRELFEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVIFDEIHYMR
DKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHNQPCHVVYTDYRPTPLQH
YIFPAGGDGIHLVVDENGEFREENFATAMQVLQEAGGNARGDMGLRGRKGNVRDNSNCYK
IVKMIMERNFAPVIVFSFSKKDCEAYALQLTKLDFNSAEEKNLVVEVFNNAIDSLSDSDK
KLPQVENVLPLLKKGIGIHHGGLLPLLKETIEILFAEGLIKALFATETFAMGLNMPARTV
LFTSARKFDGKDFRWITSGEYIQMSGRAGRRGIDDRGIVILMVDEKMSPMAAKNIVQGEA
DPLNSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNYATIPQLLENIRKQEKDHNNLK
IPNEEQIATYYKIRQQLDALAVEFQGYITKPQNILQFLQPGRLIKVKNTDDDFGWGVVVN
IQKKTDQSKLESDVQYVCEVLLHLSQESAHTHSSLSIKPCPPGQKGEMQVVPILIHLISS
ISSVRLYVPKDLRSLDSRQSILKSVQEVQRRFPCGLPLLDPIDDMGIREKGLKENIKKIE
AFEHRMYSHPLHKDPKLEEYYSLYERKAKLGQEIKKIKLEMKKKKSLLQMDELKCRKRVL
RRLGYATPSDVIEMKGRVACEIDSGQELLLTELIFHGVFTDLTVQQSCALLSCFVCQEKA
SETPKLTETLRGPLRIMQETARRIARVSKEAKIEMDEETYVDSFKPHMMDVVNAWCNGAE
FAQICKMTDIFEGSVIRIMRRLEEMLRQMCQASKAIGNTELESKFSEGIRKIKRDIVFAA
SLYL
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaccttcggagacgatcttttcgatatttttgagtcgaaagctgataattct
aaagtaactgaaaagaaaaatgaagaagagaaaatatcggttgatgatacacaaagggct
gaggatttactcagaagtatcgttaaaaagcgagagattgacaaccctgatgtgattagt
tccaagaaattgaaatctgaccatgaggattttgctgcagctgcagaagttatgcctcgt
atccaggtccacaaagttgagactttggagtcttgcacacatgaggttgctctacctcct
gatgaagaatttgttcctttgaaacctcctcctgaaaaacctgctcaggaatttccattt
attcttgatccattccaaaaggaagcacttttatgtttagaaaacaaccagtctgtattg
gtatctgcacacacatcagctggcaaaacagttgttgctgtctatgccattgcaatgtca
ctccaaaagaagcaacgtgttatatacacatctcctattaaagcattaagcaaccagaaa
tatcgagaactgtttgaagagtttcaagatgttggtttgatgaccggagatgtaactatc
aacccaactgctagttgcttagtcatgacaactgaaattttgagaagtatgttatatcga
gggtcagagatcatgagagaagttgcttgggtgatatttgatgagattcattatatgaga
gataaagaacgaggtgttgtttgggaagaaaccattattcttcttcctgataatgtacac
tatgtatttctatcagccactatccctaatgcacgacaatttgctgagtggatatgtcat
cttcataaccagccatgtcatgttgtttacactgattatcgaccaactccattgcaacat
tacatcttccctgcaggtggtgatggcattcatttagtggtagatgagaatggagaattt
agagaagagaattttgcaactgccatgcaagttttacaagaagctgggggaaacgctcga
ggagatatgggacttcgtggaaggaaaggcaatgtcagagataattccaactgctacaaa
attgtgaagatgattatggaaagaaactttgctcctgtaattgtgtttagttttagcaag
aaggattgtgaagcttatgctctccaactgaccaaactggattttaactctgccgaggaa
aaaaatttagttgtggaagtgttcaataatgccattgacagtttgtcagacagtgacaag
aaattgccacaggttgaaaatgtgcttcctttactgaaaaagggaattggaatccatcat
ggtggtttacttcctcttttgaaggagaccattgagatactttttgctgaaggtctcatc
aaggctctgtttgctacagaaacatttgccatgggtcttaatatgcctgccaggacagtt
ttattcacctctgctcgtaagtttgatggtaaagattttagatggataacatctggtgaa
tatattcaaatgagtggtcgtgctggacgtcgtggaattgatgaccgtggtattgttatc
ttgatggttgatgagaaaatgagtcctatggctgctaaaaatattgttcaaggagaagct
gatcctttgaatagtgcctttcatctaacctacaacatggtcctgaatttgttgagagtt
gaagaaattaatcctgaatatatgttggaacgatctttctaccagttccaaaactatgcc
actataccacaacttcttgaaaatattcggaaacaagaaaaagatcacaataacctgaaa
attccaaatgaagagcagatagcaacttattataagattaggcagcagcttgatgccctt
gctgttgagttccaaggttatatcacaaaaccacagaacatattgcagtttttacagcca
ggacgtttgattaaagtaaagaatactgatgatgattttggttggggagttgttgtcaat
atccagaaaaagacggatcaaagcaagttggaatcagatgttcagtacgtttgtgaagtt
cttctccatttaagtcaagaatcagctcatactcatagcagcttatctattaaaccgtgt
cctcctggacagaaaggagagatgcaggttgtacctattctcattcatttgatatcttca
ataagttccgtacgcttatatgttcctaaagacttgcggtcactggacagcagacagagc
atcctaaaatcagttcaggaagtccaacgcaggtttccatgtggtctacccttgctagac
ccaattgatgatatgggtatccgagagaaaggcttgaaggaaaacattaagaaaattgaa
gcttttgaacaccgtatgtattcccatcctcttcataaagacccaaaactggaagaatat
tattcactgtatgaacgaaaagctaagcttggacaagaaattaaaaaaatcaaacttgaa
atgaagaaaaagaagtcattactgcaaatggatgagttgaaatgccggaagcgtgtgttg
aggcgacttggctatgcaacgccttcagatgttattgaaatgaaaggcagagttgcttgt
gaaattgacagtggtcaagaacttcttcttactgagttgattttccatggagttttcact
gacctcactgtccaacagagttgtgccctcctcagttgttttgtctgccaagaaaaagca
tcagaaactcccaaattgacagaaacacttcgtggaccattaagaatcatgcaggaaact
gccagaagaattgcccgagtgagcaaagaagccaagatagagatggatgaagaaacttac
gttgattctttcaaaccacatatgatggatgttgtgaatgcttggtgcaatggtgctgag
tttgctcaaatttgtaaaatgactgatatatttgaaggaagtgttataagaatcatgcgg
cgattagaggaaatgttgagacaaatgtgtcaagcatcaaaagctattggaaacacagaa
cttgaaagtaaattttcagaagggatcaggaagataaaaagagatattgtatttgcagcc
agtttgtacctatag
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