Octopus sinensis (East Asian common octopus): 115225285
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Entry
115225285 CDS
T07665
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
osn
Octopus sinensis (East Asian common octopus)
Pathway
osn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115225285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osn03019
]
115225285
Enzymes [BR:
osn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
115225285
Messenger RNA biogenesis [BR:
osn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115225285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_NFXL1
RRM_1
RRM_Thc1
Motif
Other DBs
NCBI-GeneID:
115225285
NCBI-ProteinID:
XP_029652083
UniProt:
A0A6P7TKW4
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Position
LG27:4789254..4856757
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AA seq
599 aa
AA seq
DB search
MEVTRKNFYECLDLIQKSIEESDFVAIDGEFTGLDHPDHGQPQPFDTPAERYQKLSKGSV
EFLLLQFGLCTFKLNPETQQYETNPFNFYIFPKPFKKESPDQRFLCQSSSIDFLASQGFD
FNKVFREGIPYLTPDNEQTLRECLEQKRQLISQHGSSSYFSPLEQKDLEIPADQKVFVDT
VCESVQTFVDNSKETVLDLPPCNGFQRKLLYQTLRNKFSNSIHLETKTGERKERFIVVTK
ISSDEELKKKENEKYSTELTKLDQAVGFSKIIRLISSSGTVVVGHNMLLDIIHILHQFHS
PLPQEYEEFKGFLHSQFPNLIDTKLMASTSPFRELVSSSSLGDLLNILQTKPFKTVDYSI
PEDFPKYDLENQQLHEAGYDAFITGLCFIGMANYLDKLSSTKYPLFSPLSPLLEPFKNKL
FMSRVQDIPYVNVTGNDIQPTRDHIFHVTFPKEWKAADLYQLFMPFGNVQLSWINDTSAY
VALHNKDNAGMVLKTLTQAETYRVISYKESKRKKIAISEPQPRKKRPIILDDETNGGNNF
TKKFKTLNVDRESSANPRTGSSRPDELKRRLSEESPNDDWTSKESKQPAVQLFEKDDNW
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcaccagaaaaaatttctacgaatgtttagacctcatccaaaagtccattgaa
gaatcagactttgtggctatagatggcgagtttacaggtttggaccaccctgaccatggc
cagccccagcctttcgataccccagcagaacgataccagaagcttagcaaggggtcagtt
gagtttctactgctccagtttggtctttgtacattcaaactaaaccctgagacacagcag
tatgaaaccaatccgttcaacttctacatctttccgaaacccttcaaaaaagagtcacct
gatcaaagatttctctgtcagtcttccagcattgatttccttgcttcacaaggctttgac
tttaataaagttttcagagaaggaataccttatctgaccccagataatgaacaaacttta
cgtgaatgtcttgaacagaagagacagctcatcagccaacatggctcatcatcttacttc
agcccccttgaacagaaagacttggagatccctgctgaccagaaggtctttgttgatact
gtatgtgaaagtgtccagacgtttgtggacaactctaaagagacagtactggatcttcct
ccttgcaacggattccagagaaaacttctctatcaaaccctcagaaataagttttccaac
agtattcacctggagacaaaaactggagagcgcaaggagagattcattgtggtaactaaa
atctcgagtgacgaagagctgaagaagaaagagaatgagaagtattctacagaactgaca
aaacttgaccaagctgtgggtttcagcaagataatcaggttaatatccagcagtggcact
gtcgttgttggacacaacatgttactggacatcattcatattctacaccaattccattct
cctctgccacaggaatatgaagagtttaagggtttcttacattcgcagtttcccaacttg
atcgacacaaaactcatggcaagcaccagtccattcagagagttagtctctagcagttct
ctgggtgacttgctcaacattctacagacgaaacccttcaaaactgtggactattccata
ccagaagacttcccaaaatacgatttggaaaaccaacaacttcatgaggctggctatgat
gccttcatcaccgggctatgtttcataggaatggcaaactacctggataaactcagcagt
acaaaatatcccctcttctcaccactgtcacctttgttggagccattcaaaaacaagttg
ttcatgagccgtgtacaagacattccatacgtcaatgttacaggaaatgacatacaaccc
accagagaccatatctttcatgtgaccttccctaaagaatggaaagcagcagatctctac
cagctttttatgccttttggtaatgtgcaattatcctggatcaatgacacgtcagcctat
gttgccctccataacaaagacaatgcaggaatggtcttgaagacactcacccaagccgaa
acctaccgcgtgatctcatacaaagaatcgaagcgcaagaagatcgccatctctgagccg
caaccacgcaaaaagcgtcccatcatccttgacgatgaaacaaacggtggcaacaatttc
accaaaaaattcaagacactcaacgttgatcgagaaagcagtgccaatccaagaactgga
tcttccagaccggatgagctgaagagacgcctgtctgaagaatctcctaatgacgattgg
acatccaaagaaagtaaacagcctgcagttcagctgtttgagaaagatgataactggtag
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