Octopus sinensis (East Asian common octopus): 115232639
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Entry
115232639 CDS
T07665
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
osn
Octopus sinensis (East Asian common octopus)
Pathway
osn03013
Nucleocytoplasmic transport
osn03015
mRNA surveillance pathway
osn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115232639
09122 Translation
03013 Nucleocytoplasmic transport
115232639
03015 mRNA surveillance pathway
115232639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osn03019
]
115232639
03041 Spliceosome [BR:
osn03041
]
115232639
Enzymes [BR:
osn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115232639
Messenger RNA biogenesis [BR:
osn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115232639
Spliceosome [BR:
osn03041
]
Complex C
Other components
EJC/TREX
115232639
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
115232639
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
DUF7632
P-loop_SecA
AAA_19
Motif
Other DBs
NCBI-GeneID:
115232639
NCBI-ProteinID:
XP_029658495
UniProt:
A0A6P7U816
LinkDB
All DBs
Position
LG2:complement(90895851..90905357)
Genome browser
AA seq
426 aa
AA seq
DB search
MADNENENELLDYEEEDNETTADGTADGQTKKDVKGTYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVLAH
TRELAFQISKEYERFSKYMNNVKIAVFFGGLPIKKDEEVLKKNCPHIVVGTPGRILALAK
TKTLVLKHVKHFILDECDKMLNELDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCKK
FMQDPMEVYVDDDSKLTLHGLQQHYVKLKDNEKNRKLFELLDVLEFNQVIIFVKSVQRCM
ALAQLLVEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFN
YDMPDDSDTYLHRVARAGRFGTKGLAITFVSDENDAKVLNDVQDRFEVNITELPDEIDIS
SYIEGR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggctgataatgaaaatgagaatgaacttcttgattatgaagaggaggataatgaaacc
actgctgatggaactgccgatggacaaacaaaaaaagacgttaaaggaacttatgtgtca
attcacagttctggtttccgagatttccttttaaaacctgaattacttcgggccattgtt
gattgtggttttgaacatccttctgaagttcaacatgaatgtatacctcaagctattttg
tccatggatgtgttgtgtcaagcaaagtctggtatgggtaaaactgcagtatttgtgctg
gctacacttcagcaacttgaacctgtggatggccaggtgtctgtgcttgttctagcacac
actcgagagcttgcatttcaaattagtaaagaatatgaaagatttagtaaatacatgaat
aatgtgaaaattgctgtcttttttggtggtttacccattaaaaaagatgaagaggtcttg
aaaaagaattgtccccatatcgttgttggcactcctggacgtatcctagcattggcaaag
accaaaacattggttttaaagcatgtgaaacattttatacttgatgaatgtgacaagatg
ttgaatgaattagatatgcgaagagatgtgcaagaaatcttccgtatgactccacatgag
aagcaggtcatgatgttcagtgcaacactgagcaaagagattcgtccagtttgcaagaaa
tttatgcaagatccaatggaagtttatgtcgatgatgattctaaacttactttacatgga
ttgcaacaacattatgttaaactgaaagacaatgaaaagaatcgtaaattgtttgagctg
ctggatgttcttgaatttaaccaggtgataatatttgtcaagtctgtacagcgctgcatg
gctttggctcagctacttgttgaacaaaacttccctgccatagcaattcatagggctatg
actcaagaagaaagattatcgcgttatcaacagtttaaagacttccagaaaaggatttta
gtggcaactaatctttttggtcgtggaatggatattgaaagagtgaatattgttttcaac
tatgatatgcctgatgattcggatacttatttacatagagttgcccgtgctggtagattt
ggaacaaaaggtttggctattacatttgtctcagatgaaaatgatgccaaagttttaaat
gatgttcaagacagatttgaagtcaatatcacagaacttcctgatgaaatagacatatct
tcatacattgaaggcagataa
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