Odoribacter splanchnicus: Odosp_0302
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Entry
Odosp_0302 CDS
T01428
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
osp
Odoribacter splanchnicus
Pathway
osp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Odosp_0302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osp03019
]
Odosp_0302
03400 DNA repair and recombination proteins [BR:
osp03400
]
Odosp_0302
Enzymes [BR:
osp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Odosp_0302
Messenger RNA biogenesis [BR:
osp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Odosp_0302
DNA repair and recombination proteins [BR:
osp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Odosp_0302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
Helicase_C
UvrD_C
UvrD_C_2
Viral_helicase1
AAA_22
AAA_30
ResIII
AAA_16
SLFN-g3_helicase
HTH_29
Xpo1
NirdL-like_HTH
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
ADY31403
UniProt:
F9Z499
LinkDB
All DBs
Position
355377..360344
Genome browser
AA seq
1655 aa
AA seq
DB search
MKLDYCIRTTIEKHVGFIINPYHKTTYYIEYMSIWNRFIGLRNAEDSISNKKISVQYNAL
RYAIVDVEIGLEDYKIHDIGALRYDGAVYHKVSKEELFEFFSDVDYICGHNIIHHDAKYL
FTDKTCRWLLVDTLYISPLLFPERPFHRLLKDDKLMSEQINNPVNDCEKAKDLLLDEIAR
WKSFPEGKCRLFASLLKDKKEFEGFLSMVGAEYLNEGLTEVIRDLYKGKICGHADLVMLV
KEYPCELAYALALIDTTDQRSVTPGWVLHHYPKVEFVLKLLRHTSCKEGCDYCNTQLNVL
YNLKAFFGYEQFRTYEGEPLQEQAAQAAVKGMSLLAIFPTGGGKSLTFQLPALMAGSAVH
GLTVVISPLQSLMKDQVDNLADRGITDAVTINGLLDPITRALVIQRVQDGEASLLYISPE
MLRSKTIERILLARHIVRFVIDEAHCFSSWGQDFRVDYLYIGKFIQEYQQKKGSRNPIPV
SCFTATAKQKVVQDICDYFKQTLNLDLRLFASTASRINLHYSVIHAETDDDKYLKLRGLV
AESDCSTIVYVSRTRRTKELANKLTRDGYKALPFNGKMETDEKIDNQDAFMNDQVRIIVA
TSAFGMGVDKKDVGLVVHYDISDSLENYVQEAGRAGRDPNLSARCYVLYGDNDLDKHFIL
LNQTKLSISEIQQVWKAVKDLTRRRMRVSCSALEIARQAGWDDSVSDIETRVRTALAALE
QSGYLIRGNNVPRVYATGIMVRNMDEARVRISKSQLFGRDEIEKTVRIIRSLISQKYIAK
AQDAEAESRVDYLADILGLSKKEVVSIVERMRQEGILADSKDISAYLLDAGDSKRKSTIL
LERFAKLEKYILNRIPDEALRISCKQLNEDAMNDGIDTSREKDIRTLLYFLAIKGYIRKK
EDALRNMEISRQTDGETTLNRFEKRLEISRLTLEWLYQLVAATRKGNSEKQIVQFSVVEL
LNQIISGPHSLFTKLDNVQLEEVEEALLYLSKIGALKLEGGFLVLYNAMDIQRIKDNKSR
YKLDDYRMLNEFYKQKIQQVHIVGEYANLMVKNYNAALQYVRDYFQMDYKKFITKYFKGD
RVNEIQRNLTPKKYRQLFGQLSKCQMEIISDKDSRCIVVAAGPGSGKTRVLVHKLASLLL
LEDVKHEQLLMLTFSRAAATEFKQRLMELIGNAAHFVEIKTFHSYCFDLMGRIGNLEAVR
DVVAKAAVMINQGEVEPNKIGKTVLVIDEAQDMGVAEHALVKALMANNEEMRVIAVGDDD
QNIYEFRGSDSGYMYRLAQEPGSKFIEMTENYRSARHLVDFTNKFVKVLGKRMKSTPIIS
MRKEDGWVRVTRHESKYMYQPLVKELVRYRGNGTMCVLTQTNEEAVILMALLRKWGIDSK
LIQSMDGFLFWNMVEMRYFLRYIDKRVKTPLIPEELWENAKHATFSAYDRSQSLAYVKRC
VELFEQTNKTKYVSDFKEFVFESSVEDFCDTSGADVVVSTIHKAKGREFDDVYMLIADHY
VKDDQLMRRYYVGMTRAKNRLFVHTNGDNFNQVSADEYLIDPEEYIMPEEVVLQLSHKDV
NLRFFKELKQEVLTLRGGDVLKYKDSILYDTLTHKPVAKLSQNMQKTLSEWKERGYEVKS
ASVRFIVAWKPKDAPKDEPETAVLLPDLLLNTIIS
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
gtgaaactggattattgtatccggacaacaatagaaaaacatgttggttttataataaat
ccatatcataaaacaacttattatatagaatacatgtcaatatggaacaggtttatagga
ctcagaaatgctgaggattccatcagtaataagaaaatatctgtacaatataatgcccta
cgttatgccatagtagatgttgaaattggtttggaggattacaaaattcatgatattggg
gcacttcgctatgatggtgcagtatatcataaagtttcgaaagaggaactttttgaattt
tttagtgacgtagattatatttgtggtcacaatattattcatcacgatgctaaatatttg
ttcacggataaaacatgtcgttggcttttagtcgatacactttacatctcaccgctatta
ttcccggaacgcccattccataggctgttgaaagacgacaaactcatgagcgaacagata
aataatccggtgaatgattgcgaaaaagccaaagatttactgttggacgaaatagcacgc
tggaagtcgtttccggagggaaaatgcagactatttgcctcgctgctaaaggacaagaaa
gaatttgaaggatttctcagtatggtaggggcagagtatctcaatgagggattgaccgaa
gtaataagggacctttacaaggggaaaatttgtgggcatgcagaccttgttatgctggtc
aaagaatatccttgcgaattggcatacgcattggctctgatcgacacgaccgaccaacgt
tccgttactcccggatgggtacttcaccattatcctaaagtggaatttgtgctaaaactc
ctgcgtcataccagttgtaaggaaggttgtgattactgtaatacccaactgaacgtgctt
tataatttaaaagcattctttgggtatgaacaattccggacatatgaaggagaaccactc
caggaacaagccgctcaggcagcggtgaaaggcatgtcgttattagcgatatttcctact
ggtggaggaaaatcgcttactttccaactgcccgcactcatggccggcagtgctgtgcat
gggcttacggttgtgatctcccctttgcagtcgctgatgaaggaccaagtagataacctt
gccgatagaggtattaccgatgcggtaaccattaacggtttgttggaccccattaccaga
gcactggtcatacaaagagtacaggatggggaagcctcacttctgtatatatctccggaa
atgcttcgctctaaaactatcgagagaatattgttggcacgtcatattgtgagatttgtg
atagacgaagcacattgtttttcttcatggggacaggatttccgggtggattatctctat
ataggaaaatttatccaggaataccagcaaaagaaaggaagtagaaatccgataccggta
tcctgtttcactgctacggctaaacagaaagtagtgcaggacatttgtgactatttcaag
caaacgttgaatttggatttgcggttgtttgcatcgacggcctcaaggatcaatctgcat
tactctgtcatccatgctgaaacggatgatgataaatatttaaaactaaggggactggtg
gctgaatctgattgttcgaccatcgtttatgtatcccgtaccagacgtacgaaagaactg
gctaacaaattaactcgtgacggttataaggcattgcctttcaatggcaagatggaaact
gacgaaaagattgacaaccaggatgcatttatgaatgaccaggttcgcatcattgtggcc
acatcagcttttggcatgggagtcgataagaaagatgtcggtttggtggtgcactacgat
atttcggattctctggagaattatgtgcaggaggcagggagagccggtcgcgaccctaac
ctcagtgcccgttgctatgtgctttatggtgacaatgatttggataagcattttatatta
ttgaatcagacaaagctaagtatcagcgaaatacagcaggtgtggaaagctgtaaaagac
cttacccggcgacgtatgagagtgagttgttctgcattggaaatagcccggcaggcagga
tgggacgattcggtatccgacatcgaaacccgtgtacggacagctttagcagctttggaa
caaagtggatacctgataagaggaaacaatgtgcctcgggtatatgctacaggcatcatg
gtgagaaacatggatgaagcgagggtgcgtatatcaaagtcacagttatttggcagggat
gaaatagaaaagactgtccgaattattaggtcactgatttcacagaagtatattgccaag
gctcaggatgcagaggcagaatcgcgggtggattatctggcagatattttggggctaagt
aagaaggaagtcgtatcgattgtggagcgaatgcgccaggaaggtatattggcagatagt
aaggatatatctgcctatttgctggatgccggtgactcgaaacgaaaatcaacgatcctc
ctcgaacgttttgcaaaacttgaaaaatacatccttaaccgtattcctgacgaagcttta
cggatatcctgcaagcagctgaatgaggatgcgatgaacgacggaatcgatacctccagg
gaaaaggatatccggacactgctctacttccttgccatcaagggatatatccgtaaaaaa
gaagatgccctccgcaatatggaaatcagccgtcagacagatggggaaacaacccttaat
cgttttgaaaaacgattggaaattagtcgtttaactctggagtggttatatcaattagtt
gctgctacgagaaaaggaaattcggaaaaacagatagttcaattctctgtggtagaactt
cttaatcagataatatcaggtcctcactccttgttcactaaactcgacaatgtacagttg
gaagaggtggaggaggcgcttttgtatctctcaaaaatcggtgcgctcaaacttgaaggc
ggttttttggttctttataacgccatggatatccaaagaataaaggacaataaatcgaga
tataagttggatgactaccgaatgctgaatgaattctacaagcagaagattcagcaagtt
catatcgtaggtgagtatgccaatttaatggtgaaaaattataatgcagctttgcaatat
gtgcgggactattttcagatggactataagaaatttatcacgaaatatttcaaaggggac
agggtaaatgaaatacagcgtaatctgacgccgaagaaatatcgacaattgttcggtcag
ttgtctaaatgccagatggagattatttccgacaaggattctcgttgtattgttgtcgca
gcaggtcccggcagtggaaaaacacgtgtgttggttcacaaactcgcatcccttttatta
ctcgaagatgtaaagcacgagcaacttttgatgttgacattttcaagagcagccgctaca
gagttcaaacagagactcatggaattgataggtaacgctgcccactttgtcgagataaag
acatttcattcttattgctttgatctcatggggcggataggtaaccttgaagcagttagg
gacgttgttgccaaagctgccgtgatgataaatcagggggaggtggaacccaacaaaatc
ggtaaaacagtgttggtcatagatgaagctcaggatatgggtgttgcagaacatgcatta
gtgaaggctcttatggctaataatgaggaaatgcgtgtgatagcggtgggggatgatgac
cagaatatttatgagtttcgtggatcggattccggctacatgtatcggttagcacaagag
cctggcagtaagtttatcgagatgaccgagaattatcgcagtgcgcgccatctggtagat
ttcaccaacaaatttgtgaaagtcttgggtaaaagaatgaaaagcacgccgattatctcg
atgagaaaagaggacggttgggtgagggtgacacgtcatgaatcaaaatatatgtatcag
ccgcttgtaaaggaattggttcgctatcgcgggaatggaactatgtgtgtactcacccag
acaaatgaagaggctgtaattttgatggctcttttgcggaaatgggggattgacagcaag
ctgatacaatcgatggacggtttcctcttttggaacatggtcgaaatgaggtattttctg
aggtatatagacaaacgggtgaaaacacctctgatccctgaagaattatgggaaaatgca
aaacatgctaccttttccgcttacgatagaagccagagtctggcgtatgtgaagcgttgt
gtagagctgtttgaacaaaccaataaaacaaaatacgttagcgacttcaaagaatttgta
tttgagtcgtcggtggaagatttctgcgatacttcgggagcagacgttgtggtatcgacc
attcataaagccaaggggagagagtttgatgacgtatatatgctcattgctgaccattat
gtgaaagatgatcagttgatgcgtcggtactatgtggggatgactcgtgcaaaaaatcgg
ctgtttgtacatacgaatggggacaactttaatcaggtaagtgcagatgagtatcttatt
gacccggaagagtatattatgcctgaagaagtagtgctgcaactttctcataaagatgtc
aatctgagattctttaaggaacttaagcaggaggtactgaccttaaggggaggagatgtt
ttgaagtataaagattccattttgtacgacactttgacccataaaccggtggcgaagttg
tcacaaaacatgcagaaaaccttgtcggaatggaaagaaagaggctatgaagtaaaatct
gcatccgttcggttcatcgtggcatggaagcctaaggatgcaccgaaagacgaaccggaa
actgctgttctgttgcctgatttattactgaatactattatatcctaa
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