Odoribacter splanchnicus: Odosp_1185
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Entry
Odosp_1185 CDS
T01428
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
osp
Odoribacter splanchnicus
Pathway
osp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Odosp_1185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osp03019
]
Odosp_1185
Enzymes [BR:
osp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Odosp_1185
Messenger RNA biogenesis [BR:
osp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Odosp_1185
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
P-loop_SecA
AAA_19
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ADY32241
UniProt:
F9ZBD3
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All DBs
Position
complement(1401464..1402588)
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AA seq
374 aa
AA seq
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MTFKELNIIQPILKAIEEKGYNRPTPIQQQAIPVALSRKDILGCAQTGTGKTASFAIPII
QLLQADPIITKRKGVKALILTPTRELALQISECLDEYARYTPVRHGVMFGGVNQRPQVTM
LQKGIDILVATPGRLLDLMSQGFLSLDQVKYFVLDEADRMLDMGFIHDIKRILPKLPKEK
QTLFFSATMPDSIVTLASALLKNPVKITITPESPTVDAIEQFVYFVEKAEKGRLLISLLR
KAENQSVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVA
TDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGTAFTFCSQEERKLVDNIQ
KLTGKKLCRAEVSA
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagaattaaatataatccagccgattttaaaggctattgaggaaaaagga
tataacaggccgacaccgattcagcagcaagcaatccctgtagccttgtcccgaaaagat
atattgggatgtgcacagacaggaaccggaaaaacggcttcgttcgctattcctatcatc
cagcttttacaggcagatccgattataacgaaacgcaagggagtcaaagctttgatcctg
acgccgacccgcgaactggccttacaaatcagtgaatgtttagacgagtatgccaggtat
accccggttcgtcatggtgtgatgtttggaggagtaaaccaacgtccgcaggttactatg
ttgcaaaaaggtatcgatattctggttgcgactccggggcgtttgctcgacttgatgagt
caggggtttctcagcctggatcaggtgaaatatttcgtgctcgacgaagcggaccgtatg
ctcgatatggggtttattcacgatattaagcggatattaccgaagcttccgaaagaaaaa
cagaccttgtttttttcggcgacgatgcccgattcgattgttacgctggcttctgcttta
ttgaaaaatcctgtgaaaatcaccattactcctgaatctccgactgtcgatgctatcgaa
cagttcgtttatttcgtcgagaaagccgagaaaggacgtttattgatatcccttttacgg
aaagctgaaaatcaatcggtattggttttctcccgtacgaaacataatgccgaccggatt
gtccgggtattgggcaaagccggaatcggaagtcaggctattcacggaaacaagagtcaa
gctgcccgtcagtcggctttaggaaattttaaatcaggaaagacccgggtgatggtggct
accgatattgcggcccggggtatcgatatcaatgagttgccgttagtgatcaattatgat
ctgcctgatgtccctgaaacttatgtacatcgcatcggacggaccggaagggctgggaat
gcaggaacggcctttacattttgttctcaggaagaacgaaaactagtagataatatccag
aaattgaccggaaaaaaactctgtagggctgaagtttcggcctga
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