Odoribacter splanchnicus: Odosp_1675
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Entry
Odosp_1675 CDS
T01428
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
osp
Odoribacter splanchnicus
Pathway
osp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Odosp_1675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osp03019
]
Odosp_1675
03400 DNA repair and recombination proteins [BR:
osp03400
]
Odosp_1675
Enzymes [BR:
osp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Odosp_1675
Messenger RNA biogenesis [BR:
osp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Odosp_1675
DNA repair and recombination proteins [BR:
osp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Odosp_1675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecQ-1-like_HTH
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Motif
Other DBs
NCBI-ProteinID:
ADY32696
UniProt:
F9Z5M9
LinkDB
All DBs
Position
1993451..1995634
Genome browser
AA seq
727 aa
AA seq
DB search
MGLQINLHAKLKEYFGFDHFKGNQEAIIKNVLAGNNTFVLMPTGGGKSLCYQLPALLLEG
TAIIISPLIALMKNQVDAMRSFSAAEGVAHFLNSSLTKNEILNVKEDILSGKTKMLYVAP
ESLTKESNVEFLKKIKISFFAVDEAHCISEWGHDFRTEYRKIRPIVEEIGKAPIIALTAT
ATPKVQNDIQKNLDMMDAQVFKSSFNRPNLYYEVRPKQGDVTKDIIKFIKNHEGKSGIIY
CLSRKKVEELAEVLSINGIKAAPYHAGMDASTRSTNQDRFLMEEVDVIVATIAFGMGIDK
PDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGICLTYYSFKDIQKLEKFMQGKPIAEQEI
GKQLLMETVAYAETSLCRRKVLLHYFGETYEEDNCGCCDNCLYPKKEFEGEDYMVDALQL
VSDVKEKFKIEHLVNILIGEADSAIKSYKHDKLELFGAGSEKSRQFWTMVYRRALVSSFI
EKDIEQYGVIKLTDEGQKFLDNPKSFMLMEDHNFDENEEEEKIQEKGGVSALDSTLFAIL
KDLRKKIAKTNNLPPYVIFQDPSLEDMCTNYPITLEELANIQGVGAGKAQKYGKEFVEVI
KQYVEDNEIERAQDMVVKTVANKSKFKVYIIQNIDRQIDLEDIASALGLNFDELIKEMEA
IVFSGTKLNIDYYINKILDEEQQQEIMDYFMEASSDNISEAFDEFEGDYAEEDLRLMRLK
LHSKHGN
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgggattgcagattaatttacacgcaaaattaaaagagtattttggcttcgatcatttc
aaaggaaatcaggaagccatcattaagaacgtgctggcaggaaataacacttttgtattg
atgcctacaggaggtggtaaatcgttgtgttatcaattaccggcattgcttctcgagggc
accgcgattattatttctccgctgattgctctgatgaaaaatcaggtggatgccatgcgt
tcattttcagccgctgaaggagttgcgcattttctcaactcttcgttgaccaaaaatgag
attttaaatgtgaaagaagacattttgagcggtaaaacgaaaatgctctatgttgctccc
gaatccttgaccaaggaaagtaatgttgaatttctaaagaagatcaagatttctttcttt
gctgtggatgaggcacattgtatctcggaatggggccacgatttccggacagaataccgg
aaaatccgtccgatcgtcgaagaaatcggtaaagcgccgatcattgcattgactgcgaca
gcgacacccaaagtgcagaacgacatccagaagaacctggatatgatggatgcccaggtt
tttaaatcttctttcaaccgaccgaacctatactacgaagtacgtcctaaacaaggagat
gtcacgaaagacattattaagtttattaaaaaccatgaagggaaatccggtatcatctac
tgtctgagccggaagaaagtggaagaactggcggaagtgcttagtatcaacggtatcaaa
gcagctccttatcatgcgggaatggatgccagtacccgaagtaccaaccaggaccgcttc
ctgatggaagaggtggacgttattgtagcgaccatcgctttcggtatggggatcgacaaa
ccagacgtacgctttgtcatccattacgacattcctaaaagtctcgaagggtattatcag
gagacaggacgggcaggacgggatggtggcgaaggaatctgtctgacttattatagtttt
aaagacatccaaaagctcgaaaagtttatgcaggggaaacccattgccgaacaggaaatc
ggtaaacaattgctgatggaaacagtcgcttatgccgagacttctttatgccggcgtaaa
gtactgctccattatttcggagaaacctatgaagaagacaactgcggctgttgtgacaac
tgcctctatccgaagaaagagttcgaaggcgaagattatatggtcgatgccctgcaactg
gtcagcgatgttaaagaaaaattcaaaatcgaacatttggttaatatcctcatcggtgaa
gccgattctgccatcaaatcgtataagcatgataaactggaattattcggtgccggttcg
gaaaaaagccggcaattctggacgatggtataccggagggctttagtcagttcatttatc
gaaaaagatatagaacaatacggagtaatcaaactaacggatgaaggccaaaaatttttg
gataaccctaaaagttttatgctgatggaagatcacaatttcgacgagaacgaagaagaa
gaaaagatacaggagaaaggtggtgtatctgcgttggacagcactttattcgctatcctg
aaagatttacggaagaaaatagccaagaccaataacttgcctccttacgtcattttccag
gacccgtcactggaagatatgtgtaccaattatccgatcacactcgaagaattggccaac
atccagggcgtaggtgccgggaaagcacagaaatacggcaaagaattcgtcgaagtcatc
aaacaatacgttgaagacaacgagatcgaacgggcacaggatatggtcgtgaaaacagta
gccaataaatccaaattcaaagtatacatcatccagaatatcgaccgccagatcgatctg
gaagatatcgcttcggctttggggctcaacttcgacgaactgatcaaggagatggaagcg
atcgtcttttccggaacgaaattaaacatcgattattatatcaataagatcctcgacgaa
gagcaacagcaggaaatcatggattattttatggaggcgagttccgacaatatttccgaa
gctttcgacgaattcgaaggggattatgcagaagaagatcttcggctgatgcggctgaag
ttacattccaaacacggaaactga
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