Odoribacter splanchnicus: Odosp_1963
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Entry
Odosp_1963 CDS
T01428
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
osp
Odoribacter splanchnicus
Pathway
osp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
osp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Odosp_1963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osp03021
]
Odosp_1963
03400 DNA repair and recombination proteins [BR:
osp03400
]
Odosp_1963
Enzymes [BR:
osp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Odosp_1963
Transcription machinery [BR:
osp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Odosp_1963
DNA repair and recombination proteins [BR:
osp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Odosp_1963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
YkoP
Motif
Other DBs
NCBI-ProteinID:
ADY32969
UniProt:
F9Z833
LinkDB
All DBs
Position
complement(2347451..2351710)
Genome browser
AA seq
1419 aa
AA seq
DB search
MAFRKDNNTNKPKSFTKIAIGLASPEEILEHSSGQVLKPETINYRTYKPERDGLFCERIF
GPVKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIQLVVPVAHIWYFKSLPN
KIGYLLGLPSKKLDAVIYYERYIVVQPGIMSEKGIAELDMLTEEEYLDIVDALPADNQHL
DDDDPNKFIAKMGAEAIQMLLERLNLDDLSYELRHKANTETSQQRKNEALKRLQVVEAFR
ESKEVNKPEWMIVKVLAVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APDVILRNEKRMLQEAVDSLFDNSRKSNAVKIENNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPDLKMHECGLPKDMAAELYMPFIIRKLIERGIVKTVKSAKKIVDRRDP
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIRLHPLACTGFNADFDGDQM
AVHLPLGNEAVLEAQILMLCAHNILNPANGAPITVPSQDMVLGLYYITKPRKGAKGEGLK
FYSPEEVIIALNEKAVDLHAQIQVKIKDVDHAGNEYVHMIETTVGRVILNQFTPKNFPYI
NTLITKKSLRDIISDVFKRCGVDVTAKFLDDIKDLGYRMAFEGGLSFNLADVIVPEEKDA
LLQEGYDQVEEVMNNYNMGFITNNERYNQIIDIWTHVNAKLTNTLMKQLAEDDQGFNSIY
MMLDSGARGSREQIRQLGGMRGLMAKPQKSGATGGQIIENPILANFKEGLSVLEYFISTH
GARKGLADTALKTADAGYLTRRLVDVANDITITEEDCGTLRGVTIAAIKNNEEVVASLYE
RILGRVSVHDIYHPHTGELLVKSGDEITEEIAEAIEKSPIERVEVRSVLTCEAKKGVCSK
CYGRNLATGKLVQMGEAVGTIAAQSIGEPGTQLTLRTFHVGGTAGNISTENSLKAKYDGI
IEFEELRSVEYTQDNGQKCDVVVGRLTELRIIDKNTNIILITHNIPYGAKLFVKDGQEIK
KNDLLCEWDPFNALIITEFSGKIGSENLIEGETYKEESDETTGFREKVITEFRDKTKAPA
LTIEDKNGNIVKSYNLPVGAHIVVKEGDEVTAGSTIVKIPRAVGKAGDITGGLPRVTELF
EARNPSNPAVVSEIDGEVTYGKIKRGNREIIVTSKAGEVKKYLVSLSKQILVQENDYVRA
GTPLSDGAITPTDILNIQGPIAVQEYIVNEVQDVYRMQGVKINDKHFEIIVHQMMRKVLI
QDSGDTRFLENQIVDKSEFMEENDEMFGKKVVMEPGDSDRVKAGQIISARTLRDINSQLK
RRDLRVVEARDAVPATSAQVLQGITRAALQTSSFISAASFQETTKVLNEAAIYGKVDPLE
GLKENVICGHLIPVGTGMKELRGLVVGSKEEMEKMQGNK
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atggcttttagaaaagataataataccaacaagcccaagagctttacaaaaattgctatc
ggactggcctctcctgaggaaattctggaacattccagcggacaggtgttgaagcccgag
accatcaactaccgtacttataagcctgaacgtgacggtctgttctgtgagcggattttc
ggtccggtaaaggattacgagtgccattgcggtaaatacaaacgcatccgttataaaggt
atcgtttgtgaccgttgtggtgtggaagtgacggagaaaaaagtacgccgtgaacggatg
gggcatatccagctggtcgttccggtggctcatatctggtatttcaaatccctccccaac
aagatcggatatctgttaggattaccttccaagaaattggatgctgtcatttactacgaa
cgttatatcgtggtacaaccgggtattatgtctgaaaaaggaatcgctgagctggatatg
ctcacggaagaggaatacctggacatcgtagatgctctgcctgccgacaatcagcatctg
gacgatgacgatccgaataaatttatcgctaagatgggtgccgaggcgattcagatgttg
ttggaacgtctgaatttggacgatctgtcttacgaattacgtcataaagccaataccgag
acttctcagcaacgtaaaaacgaagcgctgaaacgtctgcaagtggtagaagctttccgt
gaaagcaaagaggtgaataaacccgaatggatgatcgtgaaggtgctggctgtaattcca
ccggaattgcgtccgttggtaccgttggacggaggacgtttcgctacttccgacctgaac
gatttgtaccgtcgggtcattatccggaataaccgtctgaaacggttgatcgaaattaag
gcgccggatgtgatcctgcgtaatgaaaaacgaatgttgcaggaagctgtcgattcattg
ttcgacaattcacgtaaatccaatgccgttaagatcgagaataaccgaccgttgaaatca
ctctccgacagtttgaaaggtaaacaaggacgtttccgtcagaacttgctcggtaaacgt
gtcgactattcggcccgttcggttattgtggtgggtccggacctgaaaatgcacgaatgt
ggtttgccgaaagatatggcagccgaattatatatgccgtttatcatccggaagttgatc
gaacggggtatcgtgaagaccgtgaagagtgccaagaaaatcgtagaccgtcgtgatccg
gtggtttgggatattctggaaaacgtattgaaaggtcatccggtattgttgaaccgtgct
ccgacccttcaccgtttgggtattcaggcctttcagccgaaattgatcgaaggaaaggct
atccgtttgcacccgctggcttgtaccggattcaatgccgacttcgacggtgaccagatg
gccgttcacttgccgctgggtaatgaagctgttctggaagctcagatcctgatgctttgt
gcacataacattctgaaccctgctaatggggcaccgattacagtgccttcgcaggatatg
gtgctcggcttgtattatatcaccaaaccgcgtaagggagctaaaggagaaggattgaaa
ttctattcacccgaggaggtgatcatcgccctgaatgaaaaggcggtagatttgcatgct
cagatacaggtgaagatcaaggatgtcgatcatgctggaaatgaatatgtccatatgatc
gaaacgactgtgggacgtgttattctgaaccagtttacaccgaagaatttcccgtacatc
aatacactgattacaaagaaatcattgcgtgacatcattagtgatgtgttcaaacgttgc
ggggttgatgtgactgccaaattcctggacgatatcaaggacctgggataccgtatggca
ttcgaaggcggattgtcgttcaatctggccgacgttatcgtaccggaagaaaaggatgcc
ctgttacaggaaggatatgaccaggtagaagaggtcatgaacaactataacatgggtttc
atcacgaacaacgaacgttacaatcagatcatcgatatctggacgcatgtgaacgccaag
ctgaccaatacgttgatgaaacaattggccgaagacgatcagggattcaactctatttat
atgatgcttgactccggggcccgtggttcccgtgaacagatccgtcagttgggcggtatg
cgtggattgatggcgaaaccgcagaaatcgggtgctaccggtggtcagattatcgagaat
ccgattttggcgaatttcaaagagggattgtccgtgttggagtactttatctctactcac
ggtgcccgtaaaggtttggccgatacggctctgaaaacggcagatgccggttacctgacc
cgtcgtttggtggatgttgccaacgatattacaatcacagaagaggattgtggtacgttg
agaggggttactatcgctgctatcaaaaataacgaagaagtagtcgcttcgttgtatgaa
agaatcctgggacgtgtgtctgtacacgatatttaccatcctcacaccggtgagttattg
gtgaaatcaggagatgaaatcactgaagagattgccgaagccatcgagaaatcaccgatc
gaacgtgtagaagtacgttctgtactgacttgcgaagcgaagaaaggggtatgttcgaaa
tgctacggacgtaacctggctaccggtaagctggtacagatgggtgaagctgtcggtacc
attgctgcacagtctatcggtgaaccgggtacacagctgaccttgcgtacattccacgtg
ggtggtacggcaggtaacatctcgaccgagaactctctgaaagcgaaatatgacggtatc
atagaattcgaggaattgcgttcagtagaatatacacaggacaacggtcagaaatgtgat
gtcgttgtcggccgtttgactgaattgcggattatcgataagaataccaacattatcctg
attacgcataatattccttacggtgcgaaactgtttgtgaaagacggtcaggaaattaag
aagaatgatctgctttgcgaatgggacccgttcaatgcattgatcattactgaattcagt
ggtaagatcggttctgaaaatctgatcgaaggagagacttacaaagaagaatcggatgaa
acgaccggtttccgtgaaaaagtaatcaccgagttccgtgataagaccaaagcacctgct
ttgaccattgaagacaaaaacgggaatatcgtcaagagttataacttgccggtaggggct
catatcgtagtgaaagaaggagacgaagtaacggccggtagtacgatcgtgaagatcccg
agagctgtcggtaaggcaggcgatatcacgggaggtcttcctcgtgtaaccgaattgttc
gaggctcgtaacccgtcgaatccggcagtcgtttctgaaatcgacggtgaggtgacttac
ggtaagatcaaacggggtaaccgcgaaattatcgtaacttctaaagccggcgaggtgaag
aaatacctggtttctctgtcaaaacagatcctggtacaggaaaatgactatgtacgtgcc
ggtacgccgttgtccgacggagcgatcactccgaccgatattctgaatattcagggaccg
attgccgttcaggaatatattgtgaatgaagttcaggatgtataccggatgcagggtgtg
aagatcaacgataaacatttcgagatcattgtacaccagatgatgcgtaaggtattgatt
caggattccggagatacccgcttcctggagaatcagatcgtggataagagcgagtttatg
gaggaaaatgacgagatgttcggtaagaaggtggtgatggaacccggagactccgatcgc
gtgaaagccggccagattatttctgcccgtacactccgtgatatcaattctcagttgaaa
cgccgggatttaagagttgtcgaagcccgcgatgctgtacctgcaacttcggctcaggta
ttgcaaggaatcacccgcgctgctttgcagacttccagctttatctctgccgcttctttc
caggaaacgacaaaagtattgaacgaagctgccatctacggtaaggtggatccgttggaa
ggcttgaaagaaaacgtgatctgcggtcacttgattccggtgggtaccggtatgaaagaa
ctccggggattggtcgttggatcgaaagaggaaatggagaaaatgcagggtaacaagtaa
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integrated database retrieval system
