Odoribacter splanchnicus: Odosp_2963
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Entry
Odosp_2963 CDS
T01428
Name
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
osp
Odoribacter splanchnicus
Pathway
osp02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
osp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Odosp_2963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osp03021
]
Odosp_2963
Transcription machinery [BR:
osp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Odosp_2963
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
GerE
PhyR_sigma2
HTH_40
HTH_24
HTH_23
HTH_10
HTH_30
HTH_VMAP-M9
DUF2774
HTH_20
HTH_5
HTH_11
DUF5691
Motif
Other DBs
NCBI-ProteinID:
ADY33931
UniProt:
F9Z6H4
LinkDB
All DBs
Position
complement(3526248..3526910)
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AA seq
220 aa
AA seq
DB search
MTSFLNRLKIRIFVPMNKVTDIDLQWYEAVRQDNYPAFEKLFQKYYDPLCRYAQGLLADG
SLAEDVVQDMFIHFWENRIKLQVKDSLRAYFYTCIRHRALKNLQKQAIVRKHNPKLTEFI
EYLLHSEYSVEEEQEIERIKAIMQELPPQCLKVFMLSAIEEKKYTEIADELSISVNTVKT
HISKAYRLIRGQLHSEESLILWYWLMSQSTCLKSEMNIRL
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
atgacaagcttcttaaatagattaaaaatacgtatatttgtcccgatgaataaggttacc
gatatagaccttcaatggtatgaagctgtcagacaagacaactatccggcttttgagaaa
ttattccagaagtattacgatcccttgtgccggtatgcccagggtttattggccgatggt
tcactggccgaggatgtggttcaggatatgttcatccacttttgggaaaaccggatcaaa
ttgcaggtgaaagattcactccgggcctacttctatacctgcatccgccaccgggccctc
aaaaatctgcaaaaacaggccattgtccggaaacataacccgaaattgaccgaatttatc
gaatacctcctccattccgaatattcggtcgaagaagagcaggaaatcgaacggatcaaa
gccatcatgcaggagttaccgccccaatgtttgaaagttttcatgctgagtgctatcgaa
gaaaaaaaatacaccgagatcgccgacgaactttcgatctcggtcaataccgtcaaaacc
catatctctaaagcttatcggttgatccggggacaattacattcggaagaatcgctcatt
ttgtggtattggctgatgagtcagtccacctgcctgaaaagcgaaatgaacatcaggtta
taa
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