Odoribacter splanchnicus: Odosp_2966
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Entry
Odosp_2966 CDS
T01428
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
osp
Odoribacter splanchnicus
Pathway
osp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Odosp_2966
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osp03019
]
Odosp_2966
03016 Transfer RNA biogenesis [BR:
osp03016
]
Odosp_2966
Enzymes [BR:
osp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Odosp_2966
Messenger RNA biogenesis [BR:
osp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Odosp_2966
Transfer RNA biogenesis [BR:
osp03016
]
Prokaryotic type
tRNA degradation factors
Odosp_2966
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
WHD_MCM4
WSLR
Motif
Other DBs
NCBI-ProteinID:
ADY33934
UniProt:
F9Z6H7
LinkDB
All DBs
Position
3529136..3531391
Genome browser
AA seq
751 aa
AA seq
DB search
MGKNKKKSKPTMSKPELSKRLLALMSNHPGESYNYKQLAMRLQVKSMDMKRQISEVLREL
GEKGELEEISTGRYKMRQRGAYITGEVELTAKGSAYIISNESKEDVFVAFPNLKHALNGD
KVKVLVYARSRDRRPEGEVVEILERKKGTFVGVVQRSANYAFLIPTGKQLPYDVFIPTEH
LNGAENGDKVVVKIKDWPESQKNPVGEVIEVLGRPGDNDTEMNAIMAEYELPVKFPPNVL
KAAEKIPLDIPEEEIRKRRDCRELTTFTIDPKDAKDFDDALSVRTLKEGVYEVGVHIADV
SYYVKENTVLDKEAYARATSVYLVDRTIPMLPERLSNGVCSLRPDEDKLCFSAIFKLDAN
AQVLDQWFGRTVIRSNRRFTYEEAQERIEGAEGDYREEILLLNRLAQKLRQDRFKAGAID
FDRVEVKFNLDEKGHPVSVYFKRSKEANKLIEEFMLLANKKVAERIGKPKSGKKAPTFVY
RIHENPLPEKLEEFNRFVAKFGYGLKTGSRKALTSSMNNLMAEVKDKPEQNMIETLAVRT
MAKAAYSTDNIGHYGLAFDYYTHFTSPIRRYPDVMVHRLLQRYLDSGRSVNKEKYEEYCK
HSSDMEQVAANAERSSIKYKQVEFMADKIGQDFEGTISGVTQWGFYVELEDSKCEGLVSM
TELDDDFYEFDEKNYCIVGRHHHKIYQLGDRVTIKVAKANLVARQLDYELVKGADEEGVI
RPLGKSREDIGRKSKTKGRKKENKPKGKKRK
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaaataaaaagaaaagcaagccgaccatgagtaagccggagttgagtaaacgc
cttttggcactgatgagtaatcacccgggtgagagttataattataagcagttggcgatg
cgattgcaggtgaagagtatggatatgaaacgccagatctcggaagtgttgcgggaatta
ggagaaaaaggagagttggaagagatttcgacaggaagatataaaatgcggcagagaggg
gcttatattaccggtgaagtcgagttgacagccaaaggttcggcctatatcatttcaaac
gagagtaaagaggatgtgtttgttgcttttcctaacctcaaacacgccctgaacggagat
aaagtgaaggtattggtatatgcccggagtcgtgaccgccgccccgaaggagaggtggtc
gagatcctggaacggaagaaaggtacttttgtcggcgtagtacaacggtcggcgaattac
gctttcctgataccgaccggtaagcagttgccctatgatgtgttcatcccgacggaacat
ttgaatggagccgaaaacggggataaagtggtggtaaaaatcaaagattggcctgaaagt
cagaagaatcctgtgggagaagtgatcgaggtgttggggcgtcccggggataacgatacg
gaaatgaatgcgattatggccgaatatgaattgccggtgaagttcccgcccaatgtgttg
aaagcggctgaaaagatccctttggatatccctgaagaggagatccgcaagcgccgcgac
tgccgcgaattgaccactttcactatcgacccgaaagatgcgaaagatttcgacgatgcc
ctttctgtccgtacgttgaaggaaggcgtgtatgaagtcggtgtgcatatcgccgatgtc
agttattatgtcaaagaaaatacggtgctcgataaagaggcttatgcgagggctacctcg
gtatatcttgtcgaccggaccattccgatgttaccggaacgcttgagtaacggggtttgt
tcgttaagacccgatgaagataagttgtgtttttctgctatttttaaattggacgctaac
gcacaggttttggaccaatggttcgggcgtacggtgatccgttcgaatcgccggtttact
tacgaagaagctcaggagcggatcgaaggtgccgaaggggattaccgggaggaaattctg
ctgttgaaccggttggctcaaaaattacgtcaggatcgctttaaagccggagcgatcgat
ttcgaccgggtagaggtgaaattcaacctggatgaaaagggacatccggtgagtgtgtat
ttcaagcgttcgaaggaagccaataagctgatcgaagagtttatgttgcttgcgaataag
aaagtggccgaacggatcggtaaacccaagagtggaaaaaaagcacctactttcgtatac
cgtattcacgaaaacccgctgcctgaaaagttggaagaattcaaccgttttgtggctaaa
ttcgggtatggattgaaaacaggtagccgcaaagcccttacttcttcgatgaataacctg
atggccgaagtaaaagacaaacccgaacaaaatatgatcgaaaccctggcggtacggacg
atggctaaggctgcctattcgaccgataatatcggacattatggtctggctttcgattat
tatacccatttcacctcaccgatccggcgttatccggatgtgatggtgcatcggttgctg
caacgttatctggacagtggacgctcggtcaataaagaaaaatacgaagaatattgtaag
cattcgtccgatatggaacaggtggcggctaatgccgaacgttcgtctatcaagtacaag
caggtggaatttatggcggataaaatcggacaagatttcgaaggtacgatttcgggtgtc
acacaatggggattttatgtcgaactggaagattcgaaatgtgagggattggtgtcgatg
accgaattggatgacgatttttatgaattcgatgagaaaaattattgcattgtcggacgt
catcaccataagatctatcaactgggagaccgggtaacgatcaaagtggctaaagcgaat
ctggtggctcgccaattggactatgagttggttaagggagcagacgaagaaggggtgatc
aggcctttgggaaagagccgggaagacatcggccggaaatcgaaaacgaaaggcaggaaa
aaggaaaataaaccgaaaggaaaaaaaagaaaatag
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