Oceaniradius stylonematis: ABWH87_00415
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Entry
ABWH87_00415 CDS
T10754
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ost Oceaniradius stylonematis
Pathway
ost03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ost00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABWH87_00415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ost03019
]
ABWH87_00415
Enzymes [BR:
ost01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABWH87_00415
Messenger RNA biogenesis [BR:
ost03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABWH87_00415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
CMS1
Peripla_BP_A-cyclase
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
XHC15815
LinkDB
All DBs
Position
84883..86265
Genome browser
AA seq
460 aa
AA seq
DB search
MAAPCGPLPRKAKFLTQFSKLGLAPVICKTLEKLELTIPTPIQAQAIPHLLEGRDLMGLA
QTGTGKTAAFSLPLIHRLIPVGSRPEPRTARALVLAPTRELANQIGTNVRGFLRDTHLRV
ETVVGGASIRAQAHKLSRGTDILIATPGRLLDLVDRKAVRLDQVQYLVLDEADQMLDLGF
IKPLQQIAKLVSPKRQTLLFSATMPKQMNTLAATYLSDPVRVEVSPPGKPADKVRQSVHH
VAQAGKVALLSDLLAAEPGSLSLVFARTKHGAEKLKKQLVAAGFEAGSIHGNKSQGQRER
AIKAFRNGEIRVLVATDVAARGIDISGVTHVFNFDLPEVAENYVHRIGRTARAGAEGEAV
AFCGPHETHLFADIERLIGRPIPVVSGERANASEARQAKKDAGARQGQRGPRRNGARGKP
GAHARGQGDGGKPAGRGPMRGKPGKPFRGGKRTRRTATAM
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atggcggccccgtgcgggccgctgccacgaaaggcaaaattcttgacgcaattttctaag
ctgggccttgcgcccgtcatctgcaagacgctcgaaaagctcgagcttacgataccgacg
ccgatccaggcgcaggccattccgcatcttctggaaggccgcgacctgatgggcctcgcc
cagaccggcaccggcaagacggcggcgttcagcctgccgctcatccaccgtctgatcccg
gtcggctcgcgccccgagccgcgcaccgcccgtgccctggtgctggcgccgacgcgcgaa
ctggccaaccagatcggcaccaatgtgcgcggcttcctgcgcgacacgcacctgcgtgtc
gagacggtggtcggcggcgcgtccatccgcgcccaggcccacaagctctcgcgcggcacc
gacattctgatcgccacgcccggtcgcctgctcgatctggtcgaccgaaaggccgtccga
ctcgatcaggtccagtatctggtcctcgacgaagccgaccagatgctcgatctgggcttc
atcaagccgcttcagcagatcgccaagctggtctcgcccaagcggcagacgcttctgttt
tcggcgaccatgcccaagcagatgaatacgctcgccgcgacctacctgagcgatccggtg
cgcgtcgaggtgtcgccgcccggcaagcccgccgacaaggtgcgccagagcgtccaccat
gtcgcccaggccggcaaggtcgcgcttctgagcgatcttttggctgccgaaccgggttcg
ctgtcgctggtcttcgcccgcaccaagcacggtgccgaaaagctcaagaagcagcttgtc
gccgccgggttcgaggccggatccatccacggcaacaagagccagggccagcgcgagcgc
gccatcaaggcgttccgcaacggcgagatccgcgtcctggtcgcgaccgatgtggcggcg
cgcggtatcgacatctccggcgtcacccacgtcttcaatttcgatctgcccgaggtggcc
gagaactatgtgcaccgcatcggccgcacggcccgcgccggcgccgagggtgaggcggtc
gccttttgcggaccgcacgaaacccatctgttcgccgatattgaacggctgatcggccgt
ccgatcccggttgtcagtggcgagcgggccaacgccagcgaagcgcgacaagccaagaag
gacgccggcgcgcgtcagggacagcgcggcccgcgccgcaacggcgcccggggcaagccc
ggggcccatgcgcgcggacagggcgatggcggcaagcccgctggccgcggcccgatgcgc
ggcaagcccggcaaaccgttccgcggtggcaagaggacacgccgcaccgccacggcaatg
tga
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