Oceaniradius stylonematis: ABWH87_02215
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Entry
ABWH87_02215 CDS
T10754
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ost Oceaniradius stylonematis
Pathway
ost03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ost00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABWH87_02215 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ost03019
]
ABWH87_02215 (pnp)
03016 Transfer RNA biogenesis [BR:
ost03016
]
ABWH87_02215 (pnp)
Enzymes [BR:
ost01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ABWH87_02215 (pnp)
Messenger RNA biogenesis [BR:
ost03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ABWH87_02215 (pnp)
Transfer RNA biogenesis [BR:
ost03016
]
Prokaryotic type
tRNA degradation factors
ABWH87_02215 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
XHC16138
LinkDB
All DBs
Position
459603..461738
Genome browser
AA seq
711 aa
AA seq
DB search
MFDHHKVELEWGGRPLTLETGKIARQADGAVLATYGETVVLATVVSEKSPREGRDFFPLT
VNYQEKTFAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFAPGYKNETQVVLTVLQH
DLENDPDIVAMIGASAALTISGVPFMGPIGAARVGYINDEFVLNPHVDEMEESDLDLIVA
GTADAVLMVELEAKELDEEAMLGAVMFGQQAFQPVINAIIKLAEVAAKEPRDYAPEDLSE
LEATMGGLISDELAEAYKITDKGARYAAIDAAKTKVFETLYPEGAENPAWNPEQIKSVFK
DLQAKVVRGNILKTKTRIDGRDLSTVRQIVSEVGVFPRTHGSAVFTRGETQAMVVATLGT
GEDEQFVDSLTGTYKENFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVHPVLPEA
EEFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPIKAPVAGIAMGLILEGDEFAVL
SDILGDEDHLGDMDFKVAGTAEGITSLQMDIKIAGITEEIMKIALDQAKGGRAHILGEMA
NALSESREELGEFAPRIEVMNIPVDKIRDVIGSGGKIIREIVEKTGAKINIEDDGTVKIA
SSSGKEIEAAKQWIHTIVAEPEVGEIYQGTVVKTADFGAFVNFFGPKDGLVHISQLAQER
VGKTTDVVKEGDKVFVKLMGFDERGKVRLSMKVVDQETGKEIERKKEKADD
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatcaccacaaagtggaactggagtggggcggtcgcccgcttacgctcgaaacc
ggcaagatcgcccggcaggccgacggcgccgttctggcgacctatggcgaaaccgtcgtt
ctggccaccgtcgtctccgagaagagcccgcgtgagggccgggacttctttccgctgaca
gtcaactatcaggaaaagacctttgccgccggcaagattcccggcggcttcttcaagcgt
gaaggccgtccgtcggaaaaagagacgctgacctcacgcctgatcgaccggccgatccgc
ccgctttttgcccccggctacaagaacgagacgcaggtcgtcctcaccgttctgcagcac
gatctggaaaacgatcccgacatcgttgccatgatcggcgcgtcggccgcgctgaccatc
tccggcgtgcccttcatgggcccgatcggcgccgcccgcgtcggctacatcaatgacgaa
ttcgtgctcaacccgcatgtcgacgagatggaggaatccgatctcgacctcatcgttgcg
ggcaccgccgatgccgttctgatggtggaattggaagccaaggaactggacgaggaagcc
atgctcggcgccgtcatgttcggccagcaggcgttccagccggtcatcaacgcgatcatc
aagctcgccgaagtggctgccaaggaaccgcgcgactatgcccccgaggatctcagcgaa
ctcgaagcgacgatgggcggcctgatctccgacgaactggccgaggcctacaagatcacc
gacaagggcgctcgctacgccgccatcgacgccgccaagaccaaggtcttcgagacgctc
taccccgaaggcgccgagaacccggcctggaaccccgagcagatcaagtccgtcttcaag
gacctgcaggccaaggtcgtgcgcggcaacatcctcaagaccaagacgcgcatcgacgga
cgcgacctgtcgacggtccgccagatcgtttcggaagtcggcgtcttcccgcgcacccac
ggctcggccgtgttcacgcgcggcgaaacccaggccatggtcgttgccacgttgggtacc
ggcgaggacgagcagttcgtcgattcgctcaccggcacctacaaagagaatttcatgctg
cactacaacttcccgccctattcggtcggtgaagcgggccgcatgggatcgccgggccgc
cgcgagatcggccacggcaagctggcctggcgcgccgtccatccggtgctgccggaagcg
gaagaattcccctacacgctgcgcgtcgtctccgagatcaccgaatccaacggctcttcc
tccatggcgaccgtctgcggcacctcgctggcgctgatggatgccggcgttccgatcaag
gcgcccgtggccggtatcgccatgggcctgatcctggaaggcgacgagttcgctgtcctg
tcggacattctcggtgacgaggatcatctgggcgacatggacttcaaggtcgcgggcacc
gccgagggcatcacctctctgcagatggacatcaagatcgccggcatcaccgaggagatc
atgaagatcgcgctcgaccaggccaagggcggccgcgcgcacattctgggcgagatggcc
aacgcactgtcggaaagtcgtgaggagctgggcgagttcgccccgcgcatcgaggtgatg
aacatcccggtcgacaagatccgtgacgtgatcggctcgggcggcaagatcatccgcgag
atcgtcgaaaagaccggcgccaagatcaacatcgaggatgacggcacggtcaagatcgca
tcgtcctcgggcaaggagatcgaggcggccaagcagtggatccacacgatcgttgccgag
cccgaagtgggcgaaatctatcagggcaccgtggtcaagaccgccgacttcggcgccttc
gtcaacttcttcggtcccaaggacggtctggtgcacatctcccagctcgcccaggagcgt
gtcggcaagaccaccgatgtcgtcaaggaaggcgacaaggtgttcgtcaagctgatgggc
tttgacgagcgcggcaaggttcgcctgtcgatgaaggtcgtcgatcaggagaccggcaag
gagatcgagcgcaagaaggaaaaggccgacgattga
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