Oceaniradius stylonematis: ABWH87_03955
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Entry
ABWH87_03955 CDS
T10754
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ost Oceaniradius stylonematis
Pathway
ost02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ost00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ABWH87_03955 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ost03021
]
ABWH87_03955 (rpoD)
Transcription machinery [BR:
ost03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ABWH87_03955 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
CEP89
Motif
Other DBs
NCBI-ProteinID:
XHC16467
LinkDB
All DBs
Position
803663..805684
Genome browser
AA seq
673 aa
AA seq
DB search
MATKEKENTEAEAPAEGGPDGPLLDLSADSVKKLIRTAKKRGYVTMDELNAVLPSQEVTS
EQIEDTMAMLSDMGINVVEDDEAEQNDDDEASTSTEVATSSGTAVSTTTKKKEPTDRTDD
PVRMYLREMGAVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELLEENI
LLRDIIDLEATYAGPEAKQAPKVPTPEEIEQARKEREEKERALRQPRRHDDITDVGGEGQ
EEEDDEEDEVNLSLAAMEAELREDVMASFDKIASIYAKLRKLQDQQVENALADGETLTTS
QKRRYKQLQDELIEQVKLLSLNNQRIDALVEQLYAINKRLMQNEGKLLRLAESYGVGREE
FLKQYQGTELDPNWLSNVASLGSPAWSEFAGKDRRKIEELRAEIQELATETGISIPEFRR
IVNQVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTP
EELSEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKGAVLPIDAAIQANL
RETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKH
PSRSRKLRSFLDQ
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaaagaaaaagaaaacaccgaagctgaagcgccggccgaaggcggacccgat
ggaccgctgctggacctcagcgcggacagcgtcaagaagctgatccgaaccgccaagaag
cgcggctatgtgacgatggacgagttgaacgccgtgctgccgtcgcaggaggtcacctcc
gagcagatcgaggacacgatggctatgctgtccgacatgggcatcaatgtcgtcgaggat
gacgaggccgagcagaacgacgacgacgaggcctccacatcgaccgaagtggccacgtca
tcgggcacggcggtttcgaccacgaccaagaagaaggaacccaccgaccggaccgacgat
ccggtccgcatgtatctgcgcgagatgggtgccgtcgaacttctgtcgcgcgaaggcgag
atcgccatcgccaaacgcatcgaggccggccgcgagacgatgatcgccggcctgtgcgaa
agcccgctcactttccaggcgatcatcatctggcgcgacgagctgctggaggagaatatc
ctcctgcgcgacattatcgatctggaagcgacctatgcgggcccggaggccaagcaggcg
ccgaaggttcccacgcccgaggagatcgagcaggcccggaaagagcgcgaggaaaaggaa
cgcgccctgcgccagccgcgccgccatgacgacatcaccgatgtcggcggcgagggccag
gaagaagaggacgacgaagaggacgaggtcaacctgtcgctggcggccatggaggccgaa
ctgcgcgaggacgtcatggcctcgttcgacaagatcgcctcgatctacgccaagctgcgc
aagctgcaggaccagcaggtcgagaacgcgctcgccgacggcgagacgctgaccacgtcg
cagaagcgccgctacaagcagctccaggacgaactgatcgagcaggtcaagctgctgtcg
ctcaacaatcagcgtatcgacgcgctggtcgaacagctttatgcgatcaacaagcggctg
atgcagaacgagggaaagctgctgcggctggccgaaagctatggcgtcggccgcgaggag
ttcctcaagcagtatcagggcaccgagctcgaccccaactggctgtccaatgtcgcgtcc
cttggctcgcccgcctggtccgaattcgcgggcaaggaccgccgcaagatcgaggaactg
cgcgccgagatccaggaactggcgaccgagaccggcatttcgatccccgaattccgccgc
atcgtcaatcaggtccagaagggcgagcgcgaggcccgtatcgccaagaaggaaatggtc
gaggcgaacctccggctcgtcatctcgatcgccaagaaatacaccaaccgcgggctgcaa
tttctcgacctgatccaggaaggcaatatcggcctgatgaaggcggtcgacaagttcgag
taccgccgcggctacaagttctcgacctatgcgacctggtggatccggcaggcgatcacc
cgctcgatcgccgaccaggcgcgcaccatccgcatccccgtgcacatgatcgagacgatc
aacaagatcgtgcgcaccagccgccagatgctgcatgagatcggccgcgagccgaccccc
gaggaattgtccgaaaagctcgccatgccgctcgaaaaggtgcgcaaggtcctcaagatc
gccaaggagccgatcagcctcgaaacgccggtcggcgacgaggaggattcgcatctgggc
gatttcatcgaggacaagggcgccgtgctgccgatcgacgcggcgatccaggccaatctg
cgcgagacgacgacccgcgtgcttgcctcgctgaccccgcgcgaggaacgcgttcttcgc
atgcgcttcggcatcggcatgaacaccgaccacacgctggaggaagtcggccagcaattc
tcggtcacgcgcgaacgcatccgccagatcgaggccaaggcgcttcgaaagctcaagcac
cccagccgctcacgcaagctgcgcagcttcctcgatcagtag
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