KEGG   Oceaniradius stylonematis: ABWH87_05855
Entry
ABWH87_05855      CDS       T10754                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
ost  Oceaniradius stylonematis
Pathway
ost03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ost00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ABWH87_05855
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ost03019]
    ABWH87_05855
Messenger RNA biogenesis [BR:ost03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     ABWH87_05855
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B_2 RMMBL Lactamase_B Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: XHC16811
LinkDB
Position
1189699..1191369
AA seq 556 aa
MTELVFVPLGGVGEIGMNFALYGYGPKERRQWLIVDCGVTFPGPDLPGVDLVLPDIRFIE
AERKNLAGIVITHAHEDHYGALLALYEKLSPDGAMPVHMTPFGAGMLEAKAQGEHGAPKI
PVEIYDGGQRFTIGPFEIEAIAVTHSIPEPVSLAIRTPAGMVLHTGDWKNDTDPALGPLT
DEPRFRALGDEGVLALVCDSTNAMREGESPSERQVSEGLAEVITNASGRVAVTTFSSNVG
RIKSIAEAAQTAGRRVLLMGRSMKRVVDVATDLGYMEGLDPFLGEDEFGHIPRNQVVIIL
TGSQGEPRAALAKLGRDEMRDVKLTAGDTVVYSSRTIPGNEKAILETKNRLIDMGIEVIE
DTDALVHVSGHPRRNELRQMYKWTRPKIGVPVHGEAAHLAAHAKLMREEGIADVMDARNG
DMVRLAPGAPEIIDDVPHGQIFKDGKIIGDDDAVGVNDRRRLSFAGHVSVSVILDRKHEI
AAEPQVVAIGLPRADAHGEDLEDILFDAVVGAVESMPRGRRKDLDAVEDAVGRAVRAAAR
NAWGKKPLVTVLVDRV
NT seq 1671 nt   +upstreamnt  +downstreamnt
atgactgaattggtatttgtacccctgggcggtgtcggcgagatcggcatgaacttcgcc
ctttacggctatgggccgaaggaacgccggcaatggctgatcgtcgactgtggcgtcacc
tttccgggtcctgacctgccgggcgtcgacctggtcctgccggacatccgtttcatcgag
gccgagcgcaagaacctcgccggcatcgtcatcacccacgcacacgaggaccattacggc
gcgctgctcgcgctgtatgaaaagctctcgcccgacggcgccatgcctgttcacatgacg
ccgttcggcgccggcatgctggaggcaaaggcgcagggtgaacatggcgcgccgaaaatt
ccggttgaaatctacgatggcggccagcgcttcacgatcggcccgttcgagatcgaggcg
atcgccgtgacccattccatccccgaaccggtatcgctcgccatccggacgccggcgggc
atggtgctgcacaccggcgactggaagaacgacaccgacccggcgcttggcccgctgacc
gacgagccacggttccgcgcgctcggcgacgaaggcgtgctggcgctggtctgcgattcc
accaacgcgatgcgcgaaggcgaatcgccgtcggagcggcaggtctccgaaggcctcgcg
gaggtcatcaccaacgcctcgggccgcgtcgcggtgacgaccttttcgtccaatgtcggc
cgcatcaagtcgatcgccgaggcggcgcagaccgccggacgccgcgtgctgctgatgggt
cgttcgatgaagcgcgtcgtcgatgtcgcgaccgaccttggctacatggaggggctcgat
ccgtttctcggcgaggacgagttcggccatattccccgcaaccaggtcgtgatcatcctg
accggctcgcagggcgagccgcgtgcggcgctggccaagctcggccgcgacgagatgcgc
gatgtgaagctgaccgccggcgatacggtcgtctattcctcgcgcaccatccccggaaac
gagaaggcgatcctggagaccaagaaccggctgatcgacatgggcatcgaggtgatcgag
gacacggacgcgctggtgcacgtttcgggtcacccgcgccgcaacgaactgcggcagatg
tacaaatggacgcggccgaagatcggtgtcccggtccatggcgaggcggcccatctggcg
gcccacgccaaactgatgcgcgaggagggcattgccgacgtcatggacgcgcgcaatggc
gacatggtgaggctggcacctggcgcgccggaaatcatcgacgatgtgccgcacggacag
atcttcaaggacggcaagatcatcggcgacgatgatgcggttggtgtcaatgaccggcgc
cgcctgtcgtttgccggtcatgtctcggtctcggtgatcctcgaccgcaagcacgagatc
gccgccgagccgcaggtcgtcgcgatcgggttgccccgcgccgatgcccatggcgaggat
ctcgaagacatcctgttcgacgcggttgtcggcgccgtcgagagcatgccgcgcgggcgc
cgcaaggacctcgacgctgtcgaggacgcggtgggccgtgccgtgcgcgcagccgcccgc
aacgcctggggcaaaaagccgctcgtgacggtgctggtcgaccgggtgtag

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