Oceaniradius stylonematis: ABWH87_05885
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Entry
ABWH87_05885 CDS
T10754
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ost Oceaniradius stylonematis
Pathway
ost03030
DNA replication
ost03430
Mismatch repair
ost03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ost00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABWH87_05885 (dnaE)
03430 Mismatch repair
ABWH87_05885 (dnaE)
03440 Homologous recombination
ABWH87_05885 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ost03032
]
ABWH87_05885 (dnaE)
03400 DNA repair and recombination proteins [BR:
ost03400
]
ABWH87_05885 (dnaE)
Enzymes [BR:
ost01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ABWH87_05885 (dnaE)
DNA replication proteins [BR:
ost03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ABWH87_05885 (dnaE)
DNA repair and recombination proteins [BR:
ost03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ABWH87_05885 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
XHC16816
LinkDB
All DBs
Position
1196157..1199663
Genome browser
AA seq
1168 aa
AA seq
DB search
MAPQDPAGGASLIEPGFVHLRVHSAYSLLEGALKLPRVIDWAKDNGAPAIAVTDTANLFG
ALEFAQKASAAGVQPIIGCQLPIRFDGEGDDERGQGRGGKGMTTDAAIVLLAANETGYRN
LVELVSRAYLDEDDLDCVRIHDGWLAQRAEGIICLTGGPSGPVGSALADGHRKLAEQRLV
TLRTLFGDRLYVELQRHGSWDRALEARTVELAYRHHLPLVATNEAFFLNRADFEAHDALI
AIADGALLSMDDRRRLTPDHWLKPAADMIRLFSDLPEATANTVEIARRCSWFPRKIDPIL
PRFAAVPDGATAAEAEKAEADELRRQAIEGLNARLEHQGMADGYTREDYDKRLDHELSII
EGMKFPGYFLIVADFIKWAKARDIPVGPGRGSGAGSLVAWALTITDIDPLRFSLLFERFL
NPDRVSMPDFDIDFCQERRDEVIRYVQDKYGRDQVAQIITFGTLQARAVLRDVGRVLEMP
YGQVDRLCKLVPNNPANPTTLAKAIEGEAKFAEEREREPIVGQLLDMSLKLEGLYRHAST
HAAGIVIGDRPLSQLVPLYRDPRSDMPVTQFNMKWVEDAGLVKFDFLGLKTLTVLETAVK
LLARRGVTIDLSALPLDDRPTYEMMARGETVGVFQVESPGMRKALLGMKPDRIEDIIALV
ALYRPGPMDNIPTYNARKHGDEQIASIHEKIDHLVEETQGVIVYQEQVMEIAQVLAGYSL
GEADLLRRAMGKKIRAEMDKQRVRFVDGAVERGVSRPQADFIFDLLAKFADYGFNKSHAA
AYAMVAYQTAYLKAHYPVEFLAASMTFDMANTEKLNDFRRDALRLGIEVTPPSVQTSHRM
FEVGENRIFWALAAIKGVGEAAVDHIVAVRPEGGFDSLEDFARRIDPRIVGKRVFEALID
AGALDCFGHDRAALSAGLERIIGLSQRVAEEAASGQGDIFGSMEAVQPERLALPTDAQWS
DAEKLMRELRAIGFYFSAHPLDAYQPILEKMRVQTHADFAIAIKRGAEAGRLAGTVAARQ
VRRTRTGNKMGIVTLSDATGQYEVVMFSEMLDQYGDMAEVGKSFVLTVTVREREDGSVSL
MLTSMSTLDEQAGADAAHVLRVFMRDAEPAKSVAHHLRQKGPSPVSLILIKPDGAGEVEI
ELPGQYVVSGPVASAIKSVPGVVDVELV
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
ttggcacctcaggacccagcgggcggcgcatcgctcatcgagcccggtttcgttcatctg
cgcgtccactcggcctattcgctgcttgagggcgcgctcaaactgccgcgtgtcatcgat
tgggcaaaagacaatggcgccccggccattgccgtcaccgacaccgccaacctgttcggc
gcgcttgaattcgcgcagaaggcttcggcagccggcgtccagcccatcatcgggtgccag
ttgccgatccggttcgatggcgagggcgacgatgagcgcgggcagggacggggcggcaag
ggcatgacgaccgacgcggcgatcgtgctgctggcggccaacgagaccggctaccgcaac
ctcgtcgaactggtcagccgcgcctatctcgacgaagacgatctcgattgcgtgcgcatc
catgatggctggctggctcaacgcgccgaaggaatcatctgcctgaccggcgggccgtcg
gggcccgtcggcagcgcccttgccgacgggcaccgcaaactggccgaacagcgtctcgtc
actttgaggaccttgttcggcgaccggctttatgtcgaactgcagcggcacggatcgtgg
gaccgtgcccttgaggcacggacggtcgaactggcctaccgccatcatctgccgctggtc
gccaccaacgaggcgttctttctgaaccgcgcggacttcgaggcccatgacgcgctgatc
gccatcgccgatggcgcgctcttgtcgatggacgacagacgccgattgacgcccgaccat
tggctcaagccggcggctgacatgatccggctgttttcggacctgcccgaggcgaccgcc
aacacggtcgagatcgcgcggcgctgttcctggttcccgcgcaagatcgatccgatcctg
ccgcgctttgccgccgtgcccgacggcgcgaccgccgccgaggcggaaaaggccgaggcg
gacgaattgcgccggcaggcgatcgagggcctgaacgcgcgcctcgaacatcaggggatg
gccgatggctatacccgcgaagactatgacaagcggctcgatcacgaactgtcgatcatc
gaggggatgaagttccccggctacttcctgatcgttgccgacttcatcaaatgggccaag
gccagggacattcccgtcggtccgggccgcggctcgggcgcgggttcgctcgttgcatgg
gcgctgaccatcaccgacatcgacccgttgcgcttttcgctcctgttcgagcgcttcctc
aatcccgatcgcgtgtcgatgccggacttcgacatcgacttctgccaagaacggcgtgac
gaggtgatccgctacgtccaggacaagtatggccgcgatcaggtcgcccagatcatcacg
ttcggaacgctgcaggcgcgcgccgtgctacgtgacgtgggtcgcgtgctggagatgccc
tatggccaggtggaccggctgtgcaagctggtgcccaacaatccggccaatccgacgacg
ctcgccaaggccatagagggcgaagccaagttcgccgaagagcgcgagcgcgaaccgatc
gtcggccagttgctcgacatgtcgctcaagctcgaagggctttaccggcacgcctcgacc
catgcggcgggcatcgtcatcggcgaccggccactgtcgcaactcgttccgctctaccgc
gatccgcgctcggacatgccggtcacccagttcaatatgaaatgggtcgaggatgcggga
ctggtcaagttcgactttctcggtctgaagacgctgacggtgctcgagacggcggtgaag
ctgctggcgcggcgcggtgtgacgatcgacctgtcggcgctgccgctcgacgaccggccc
acctacgagatgatggcgcgcggcgagacggtcggcgtcttccaggtggaaagcccgggc
atgcgcaaagcgctgctcggcatgaagccggaccgcatcgaggacatcatcgcgctggtc
gcgctctaccggcccggcccgatggacaacatccccacctacaatgcccgcaagcatggc
gacgaacagatcgcctcgatccacgagaagatcgaccatctggtcgaggagacgcaaggc
gtgatcgtctatcaggaacaggtgatggagatcgcccaggtcctggccggctattcgctc
ggtgaagcggaccttttgcgccgtgccatgggcaagaagatccgcgccgagatggacaag
cagcgcgtgcgcttcgtcgacggcgcggtcgagcgcggcgtctccaggccgcaggccgac
ttcatcttcgatctgctggccaagttcgccgattacggcttcaacaagtcgcacgcggcc
gcgtacgcgatggtcgcctaccagaccgcctatctgaaggcgcattatccggtcgagttc
ctcgccgcgtcgatgaccttcgacatggccaacaccgaaaagctcaacgatttccggcgc
gacgcgctgcggctcggcatcgaggtcacgccgccatcggtgcagacctcgcaccggatg
tttgaagtgggcgagaaccgcatcttctgggcgctggcggcgatcaagggcgtcggcgag
gcggcggtcgaccacatcgtcgccgtgcgtcccgagggcggttttgacagccttgaggat
ttcgcccggcgcatcgatcccaggatcgtcggcaagcgcgtcttcgaggcgctgatcgat
gccggcgcgctcgattgtttcggccatgatcgtgccgcactttccgccgggctcgaaagg
atcatcggcctgtcgcagcgcgttgccgaagaagcggcgagcgggcagggcgacattttc
gggtcgatggaagcggtgcagcccgaacggctggcgctaccgacggatgcgcaatggtcc
gacgccgaaaagctgatgcgcgaactgcgtgccatcggtttttacttctccgcccatccg
ctggacgcctaccagccgattctcgaaaagatgcgcgtgcaaacgcatgccgacttcgcc
atcgcgatcaagcgcggcgccgaggcaggccggctggcgggcacggtggcggcccggcag
gttcgacgcacacgcaccggcaacaagatgggcatcgtcaccctgtccgacgccaccggc
cagtatgaggtggtgatgttctcggagatgctcgaccagtatggcgacatggccgaggtc
ggaaagagtttcgtcctgacggtcaccgtgcgcgagcgcgaggacggctcggtctcgctg
atgctgacctcgatgagcacgctcgacgagcaggccggcgccgatgcggcccatgtgctg
cgcgtcttcatgcgcgatgcggaacccgccaaatcggtggcgcaccatctgcgccagaag
gggccgagcccggtttcgctgatcctcatcaagcccgacggtgccggtgaggtcgagatc
gagctgcccggccagtatgtggtctcggggcccgttgccagcgcgatcaaatccgtgccg
ggcgtggtcgacgtcgaacttgtctga
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