Oceaniradius stylonematis: ABWH87_07085
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Entry
ABWH87_07085 CDS
T10754
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ost Oceaniradius stylonematis
Pathway
ost03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ost00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABWH87_07085 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ost03021
]
ABWH87_07085 (rpoC)
03400 DNA repair and recombination proteins [BR:
ost03400
]
ABWH87_07085 (rpoC)
Enzymes [BR:
ost01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABWH87_07085 (rpoC)
Transcription machinery [BR:
ost03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABWH87_07085 (rpoC)
DNA repair and recombination proteins [BR:
ost03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABWH87_07085 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
RnfC_N
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
XHC17032
LinkDB
All DBs
Position
1435615..1439826
Genome browser
AA seq
1403 aa
AA seq
DB search
MNQEIANLFNPQATSQNFDSIRISIASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIATLLDMTLKDIERVLYFENYIVTEPGLTTLQEQQLLSEEEYMMAAEEFGEDQFTA
MIGAEAIQELLASIDLPKTAVDLREELDATSSELKTKKLMKRLKVVENFIDSGNRPEWMI
MKTIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDMVLGLYYLSIVAEKEPGEGMVFADMGELHHALE
NKVVTLHTKIKGRFKTVDADGNDVWELHETTPGRMIIGELLPKNVKVPFDICNTEMTKKN
ISKMIDVVYRHCGQKETVIFADRIMALGFKHACTAGISFGKDDMVIPESKAKIVEETDKI
VKEYEQQYNDGLITFGEKYNKVVDAWARCDDRLTEETMAGIQAVQFEESGRQKQMNSIYM
MARSGARGSTRQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITADDCGTDKGLTMTPIVDAGQVVATLGQRVLGRTV
LEDVVNLKTDEVLVKAGSMVSEPDVDAIEAAGIQAIKIRSALTCEMQSGVCAVCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHMGGTAQVVDTSFVEASYDGVVEIKNRNI
VRDSNGNLIAMGRNMAVIIKDEKGEERATHKLTYGSKLMVDDGDRIKRGQRLAEWDPYTR
PIMTEVEGTVSFEDLVDGISMQESADENTGITKREVIDWRSNPRGADLKPALAILGKDGE
VAKLARGGDAKFLLSVDAVLSVEPGAKVKPGDVIARIPMESAKTKDITGGLPRVAELFEA
RRPKDHAVIAEIDGTIRFGRDYKNKRRISIEPAEEGVEPAEYLIPKSRPFHLQDGDPIEK
GDYILDGNPAPHDILAVRGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEI
TEPGDSGYIAGDSVDRIELEDVNERLVEEGKQPASGDPVLLGITKASLQTPSFISAASFQ
ETTKVLTEASIAGKIDTLQGLKENVIVGRLIPAGTGGAMNEIRRIATARDDLIIEERRKQ
ADAEAADAMLADMREGEEAPAAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagagatcgccaatctcttcaatcctcaggccacttcacagaatttcgactcc
atccggatctcgatcgcgagcccggaaaagatcctgtcctggtcgttcggcgagatcaaa
aagcccgaaacgatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgcg
cgcatcttcggtccgatcaaggactatgagtgcctgtgcggcaagtacaagcggatgaag
tacaagggcatcatctgcgagaaatgcggtgtcgaggtcacgctgtcgcgcgtgcgccgc
gagcgcatgggccatatcgaactggccgcgcccgtcgcccatatctggttcctcaagtcg
ctgccgagccgcatcgcgacgctgctcgacatgacgctcaaggacatcgagcgggttctt
tacttcgagaactacatcgtcaccgagcccggcctgaccacgctccaggagcagcagctc
ctgagcgaggaagagtatatgatggccgccgaggaatttggcgaggaccagttcaccgcc
atgatcggcgccgaggcgatccaggagcttttggcctcgatcgacctgcccaagaccgcg
gtcgatctgcgcgaggaactcgatgccacctcgtccgaactcaagaccaagaagctgatg
aaacggctcaaggtggtcgagaacttcatcgattcgggcaaccgtcccgaatggatgatc
atgaagaccattccggtgatcccgccggacctgcgtccgctggtgccgctcgatggcggc
cgcttcgcgacgtcggacctcaacgatctctatcgccgcgtgatcaaccgcaacaaccgt
ctcaagcggctgatggaactgcgcgcgccgggcatcatcatccgcaacgaaaagcgtatg
ctgcaggaatcggtcgatgcgctgttcgacaatggccgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctcagcgacatgctcaagggcaagcagggccggttc
cgccagaaccttctgggcaagcgcgtcgattattccggccgttcggtgatcgtgaccggc
cccgaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgaactgttcaag
ccgttcatctatgcgcgcctcgacgccaagggctattcgtccaccgtcaagcaggccaag
aagctggtcgagaaggaaaagccggaagtctgggacatcctggatgaagtgatccgcgag
catcccgtgctgctcaaccgcgcgccgacgctgcaccggcttggcatccaggcgttcgag
ccggtcctcatcgagggcaaggcgatccagcttcacccgctggtctgcaccgccttcaac
gccgacttcgacggcgaccagatggccgttcacgtcccgctgtcgctggaagcgcagctg
gaagcgcgcgtcctgatgatgtcgaccaacaacatcctgcacccggccaacggccagccg
atcatcgtgccctcgcaggacatggtgctgggtctttactacctttcgatcgtcgccgag
aaagagccgggcgaggggatggtgttcgccgacatgggcgagttgcaccatgccctcgaa
aacaaggtcgtcacgctgcacaccaagatcaagggccgcttcaagacggtcgatgcggac
ggcaacgatgtgtgggaactgcacgagaccacgccgggccggatgatcatcggcgaattg
ctgcccaagaacgtcaaggtgccgttcgacatctgcaacaccgagatgaccaagaagaac
atctccaagatgatcgacgtggtctatcgccactgcggccagaaggagacggtgatcttc
gccgaccgcatcatggcgctcggcttcaagcacgcctgcaccgccggcatctcgttcggc
aaggacgacatggtcatccccgagagcaaggccaagatcgtcgaggagaccgacaagatc
gtcaaggagtacgagcagcagtacaatgacggcctgatcaccttcggcgagaagtacaac
aaggtggtcgacgcctgggcgcgctgcgacgatcgtctcaccgaagagacgatggccggc
attcaggcggtgcagttcgaggagagcggccgccagaagcagatgaactccatctacatg
atggcccggtccggcgcgcgcggctccacccgccagatgaagcagctcgccggcatgcgc
ggcctgatggcgaaaccgtcgggcgagatcatcgagacgccgatcatctccaacttcaag
gaaggcctgaccgtgaacgagtacttcaactcgacccacggtgcccgcaagggtctggcc
gacaccgccctgaagactgcgaactcgggctatctgacgcgtcgtctggtcgatgtcgcg
caggactgcatcatcaccgccgacgattgcggcaccgacaagggcctgaccatgacgccc
atcgtcgacgccggtcaggtggtggcaacgctcggacagcgtgtgctgggccgtacggtg
ctggaggatgtcgtcaacctgaagaccgacgaggtgctggtgaaggccggttcgatggtc
tccgagcccgatgtcgacgccatcgaggcagccggtatccaggcgatcaagatccgctcg
gcgctgacctgcgagatgcagtccggcgtgtgcgcggtctgctatggccgcgatctggcg
cgcggaacgcccgtcaaccatggcgaggcggtcggcgtgatcgcggcccagtcgatcggc
gagccgggcacccagctcaccatgcggaccttccacatgggcggcacggcgcaggtggtc
gacacttcgttcgtcgaggcgtcctatgacggcgtggtcgagatcaagaaccgcaacatc
gtgcgcgattccaacggcaatctgatcgccatgggacgcaacatggccgtcatcatcaag
gacgagaagggcgaggagcgggcgacgcacaagctgacctacggctccaagctgatggtc
gatgacggcgaccggatcaagcgcggccagcgcctcgccgaatgggacccctatacccgt
cccatcatgaccgaggtcgagggcaccgtttcgttcgaggacctggtcgacggcatttcg
atgcaggagtctgccgacgagaacaccggcatcaccaagcgcgaggtgatcgactggcgg
tccaacccgcgcggcgccgacctcaagccggcgctggcgatcctgggcaaggacggcgaa
gtcgccaagctggcgcgcggcggcgacgccaagttcctgctctcggtcgatgcggtcctg
tcggtcgagccgggcgctaaggtcaagccgggcgacgtgatcgcgcgtattccgatggaa
agcgccaagactaaggacatcaccggcggtctgccgcgggtggccgaactgttcgaggcg
cgccgtcccaaggatcacgcggtcatcgccgagatcgacggcacgatccgcttcgggcgc
gattacaagaacaagcgccgcatctcgatcgagccggccgaggaaggcgtcgagcccgcg
gaatatcttattccgaagtcgcggcccttccacctgcaggatggcgacccgatcgagaag
ggcgactacatcctcgacggcaacccggcaccgcacgacatcctggccgtgcgcggcgtg
gaggcgctcgcctcctacctcgtcaacgaaatccaggaggtctaccggctgcagggcgtg
gtgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtcgagatc
accgagcctggcgattcgggctatatcgccggcgacagcgtcgatcggatcgagctcgag
gatgtcaatgaacggctggtcgaggaaggcaagcagcccgccagcggcgatcccgttctg
ctcggcatcaccaaggcttcgctgcagacaccgtccttcatctcggcggcttccttccag
gagaccaccaaggtgctgaccgaggcctcgatcgccggcaagatcgacacgctgcagggc
ctgaaggaaaacgtcatcgtcggccgcctgattccggcgggcaccggtggcgcgatgaac
gagatccgccgcatcgccaccgcgcgcgacgatctgatcatcgaagagcgccgcaagcag
gccgacgcggaagctgccgatgcgatgctcgccgacatgcgcgaaggcgaggaagcgccg
gccgccgagtag
DBGET
integrated database retrieval system
