KEGG   Oceaniradius stylonematis: ABWH87_17480
Entry
ABWH87_17480      CDS       T10754                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
ost  Oceaniradius stylonematis
Pathway
ost03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ost00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ABWH87_17480 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ost03021]
    ABWH87_17480 (rho)
   03019 Messenger RNA biogenesis [BR:ost03019]
    ABWH87_17480 (rho)
Transcription machinery [BR:ost03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     ABWH87_17480 (rho)
Messenger RNA biogenesis [BR:ost03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     ABWH87_17480 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB S1CSD-TOTE-2 AAA_22 AAA_25 NACHT Spore_III_AA AAA Fungal_virus_P2_C
Other DBs
NCBI-ProteinID: XHC15621
LinkDB
Position
complement(3539099..3540364)
AA seq 421 aa
MEQMKLHDLQQKSAPELVEFAESLEVENASVLRKQELMFAILKRLAADDIEIIGEGVVEV
LQDGFGFLRSASANYLPGPDDIYISPSQIRRFSLKTGDTVQGTIRAPKDGERYFALLKVN
TINFEDPEKIRHKSHFDNLTPLYPDSRINMEVENAETKDLSARVIDLVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAT
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPS
MDILKSGTRKEDLLVPRSDLQKIFVLRRILSPMGTTDAIEFLIDKLRQTKNNGEFFDSMN
A
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggaacaaatgaagctacacgatttgcagcagaagtctgcgcccgaacttgtggagttc
gccgaaagccttgaggtcgaaaatgccagtgtcctgcgcaagcaggagctgatgtttgcc
attctcaagcgtctggccgccgatgatatcgagatcatcggcgagggcgtggtcgaggtg
cttcaggacgggttcggctttttgcggtcggccagtgcgaattatctgcctggacctgac
gacatctatatctcgccatcgcagatccggcgtttttcgctgaagaccggcgatacggtc
cagggcacgatccgtgcgcccaaggacggggaacgctattttgcgttgctcaaggtcaac
acgatcaatttcgaagaccccgagaagatccgtcacaagagccacttcgacaatctgacg
ccgctttatcccgacagccgcatcaacatggaggtcgaaaacgccgagacaaaggatttg
tcggcgcgcgtgatcgatctcgtcgcgccgctcggcaagggccagcgcggtctgatcgtc
gcgccgcctcgcaccggtaaaacggtgcttttgcagaacatcgcccattcgatcaccgcc
aatcaccccgaatgctatctgatcgtactgctgatcgacgaacggcccgaggaagtcacg
gacatgcagcgttcggtgaagggcgaggtcgtgtcgtcgacgttcgatgagccggcaacc
cggcatgtgcaggtggccgagatggtgatcgaaaaggcaaagcgccttgtcgagcatgga
cgcgatgtcgtcatcctgctcgattcgatcacgcggctcggccgtgcctacaacaccgtc
gttccgtccagcggcaaggttttgaccggcggtgtcgatgccaatgcgctgcaacggccc
aaacgctttttcggcgcggcgcgcaatatcgaggaaggcgggtcgctgacgattatcgcc
accgctctgatcgatacgggcagccgcatggacgaggtgatcttcgaagagttcaaggga
acgggcaattcggaaatcgtgctcgaccggaaggtcgccgacaaacgcatcttcccctcc
atggatatcctcaaatcgggtacccgcaaggaagaccttctggtgccgcgttcggacctt
cagaagatcttcgtgcttcggcgcattctgtcgccgatgggaacgacggatgccatcgag
ttcctgatcgacaagctgcgccagaccaagaacaatggcgaattcttcgattccatgaac
gcctga

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