Oceaniferula spumae: NT6N_05450
Help
Entry
NT6N_05450 CDS
T11191
Symbol
rtcB_1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
osu Oceaniferula spumae
Brite
KEGG Orthology (KO) [BR:
osu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
osu03016
]
NT6N_05450 (rtcB_1)
Enzymes [BR:
osu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NT6N_05450 (rtcB_1)
Transfer RNA biogenesis [BR:
osu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NT6N_05450 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
NT6N_05450 (rtcB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BDS05505
UniProt:
A0AAT9FHR8
LinkDB
All DBs
Position
609905..611386
Genome browser
AA seq
493 aa
AA seq
DB search
MKIHPTGEATGFLPARDNKGKPITVIGTEAIREGFGSECLSQALNARSAPGVSEVVLNPD
AHVGYGAPIGCVMASPTHIYPGPVGVDIKCSMSLIQMNVPQEAIADKSTRRALINAICER
TPTGAGKGQRSAKKSRRIETETGKLAVTQGASKEVCEAMGIPPEWAERCEDSFHVGHDRS
QAALEDRLDRMLSGGYAQRFGGKVQQFGSYGGGNHFGEAEAVSISDTAEARAAAETFGLL
DGHVAFLSHCGSRGFGHDLASSQFRTLQKKFDLWGTPFPANDKHLCYAPLGTPEANAYID
DMSLGANFATVNHLLINALVLEAFQEVLPGTTGQLVYFISHNIARQEKVNDQFQWVHRKG
ATRAFPAGHYSLKDTPFSETGHPILLPGNPRDGSVVMAALPGAEKSCYSVNHGAGRSLGR
GQAFRSLDQKKVDSELDEHDILSNCRAYPRDEAPDAYKDFSEVLKSVEKAELAHTVAKLD
ARFVIKDASKADD
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatccatcctacaggcgaagccaccggcttcctccccgcacgcgataacaaagga
aaaccgatcaccgtgatcggcaccgaggcgatccgtgaaggcttcgggtccgaatgtctc
tctcaagctctcaatgcccgctccgctcctggagtttccgaagtggtgctgaatcctgat
gcccacgtcggctacggagcgcccatcggctgtgtcatggcatcacctacgcatatctac
cctggccctgtcggtgtcgacatcaagtgctcgatgagcctgatccagatgaacgttcct
caggaggcgattgctgacaaaagcacccgccgcgcactgatcaacgccatctgcgaacgc
acccccaccggggctggaaaaggtcaacgctcggcgaaaaaatcacgccgtatcgagacc
gaaaccggcaagctcgcggtgacgcaaggtgcgtccaaagaagtctgcgaagccatgggg
atcccacccgagtgggcagagcgctgcgaagacagcttccatgtaggtcacgatcgatca
caagccgcgctggaagaccgactcgaccgtatgctctcaggcggctacgcccaacgcttc
ggcggaaaggtgcagcagtttggatcctacggcggaggaaatcacttcggtgaggccgag
gctgtcagcatctcagacactgccgaggcacgtgccgcagcggaaacctttggcctgtta
gacggacacgttgctttcctctcgcactgtggatcacgcggtttcggtcacgatctcgcc
agctcgcagttccgcaccctgcagaagaagtttgatctctggggaacccccttcccagcc
aacgacaaacacctctgctacgcgccgctgggaacacccgaagcgaacgcctacatcgat
gacatgtcgctgggggcgaacttcgccaccgtgaaccacctgctgatcaacgcgttggtg
ttagaggctttccaagaagtgctccccggcaccactgggcagctggtttacttcatcagc
cataacatcgcacgtcaggagaaggtcaacgatcagttccagtgggttcaccgcaaggga
gcgacccgtgccttccctgctggccactacagcctgaaagacacaccgttttctgaaacc
ggacacccgatcctgctgccaggaaacccacgcgatggctcggtcgtcatggccgccctg
cctggtgcggagaagtcctgctactcggtgaaccacggcgccgggcgtagcttgggtcga
ggtcaggcgttccgttcactcgatcagaaaaaggtcgatagcgaacttgatgagcacgat
atcctaagcaactgtcgcgcttacccacgcgacgaagcgcccgatgcctacaaggacttc
agcgaagttctcaaaagcgtcgaaaaagcagaactggcccacactgtggccaagctcgac
gcccgcttcgtgatcaaagacgcgagcaaggcggatgattaa
DBGET
integrated database retrieval system
