Oceaniferula spumae: NT6N_13210
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Entry
NT6N_13210 CDS
T11191
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
osu Oceaniferula spumae
Pathway
osu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NT6N_13210 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osu03019
]
NT6N_13210 (rnr)
03016 Transfer RNA biogenesis [BR:
osu03016
]
NT6N_13210 (rnr)
Enzymes [BR:
osu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NT6N_13210 (rnr)
Messenger RNA biogenesis [BR:
osu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NT6N_13210 (rnr)
Transfer RNA biogenesis [BR:
osu03016
]
Prokaryotic type
tRNA degradation factors
NT6N_13210 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
BDS06281
UniProt:
A0AAT9FK06
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Position
1548412..1550763
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AA seq
783 aa
AA seq
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MNKLRERIRVLMKSPDYRPLNKSEFARTLKLKPNERSELRAELLRLENKGLIVRGKKGRF
TLRSESGAQGDKPGKQPQRDVKGGKKGGRKKSGNGALLIGNLRFQSSGNAWFYPDANDAT
NEAAGMDLQKFSRIFVSSNKTSTAMNGDKVMVRVDRIGPPEWANRRRGRAQKAAGMKPPE
DEAAGYVEKIVERGMARIIGTYFHHGKFSHVQPDDAQIPDVNIEPVKKGDKDSPQPKPGQ
KVAVALTVWDNANSAPRGRITEVLGWPDTPGVDMLSIVHKHGLRSEFPDSVLKEAKAFGS
EVTEKDTAGRDDWRDITVITIDPHDAKDFDDAISVQKMDNGDWQLGVHIADVSHYVKPGT
ALDKEAAARGNSTYMADRVLPMIPRELSNHLCSLMPEVDRLTQCCLMRITQDGKIKSAKF
TRAVIHSARRFTYEEAQDILMAPEDEVAKRFPEEKEAITSMLHESWRLASMLRKRRFENG
ALDLDMPEVKVLLDEKGQPTGIEKSDYNESHQLIEEFMLIANESAAKLLKNKRQPTVYRI
HEDPDPDRLNEYAELAKLHGYKPGDLTNKKHIQALLDKAKGTIEEPAIKIGLLKSLKRAA
YFQDPLGHYGLSKENYCHFTSPIRRYADLIVHRALQKHLGNPPAKADRTPGPGEMAQIAL
HISETERTSAEAENESRRLKMLQYLHMCTLEKDPPTFNVVITEVRHFGLFVEAVDIQTKG
LVKVEDLPPLKGGKEWKFEANLMRFTGPYEQMFTVGQQHLCHVAHVDMEQQRVDFKLADA
QQE
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgaataaacttcgggagcgcatacgagtgctcatgaaatcccctgactaccgcccgctg
aacaaatctgaatttgcccgcactctcaagctcaagccaaacgaacgctccgagctccgg
gcggaattactccggcttgaaaacaaaggcctcatcgtgcgcggaaaaaaaggacgattc
acccttcgctcagaatccggcgcccaaggcgataaacccggcaaacaaccccagcgcgat
gtcaaaggcgggaaaaaaggtggtcgcaaaaaatccggaaacggtgccctactgatcgga
aatctccgattccaaagttccggcaacgcctggttctatccggacgccaacgatgctacc
aacgaagctgcgggaatggatttacagaaattcagccgcatctttgtctcgtccaataaa
acatccaccgcgatgaatggcgacaaagtgatggtgcgtgtcgaccggatcggaccgcca
gagtgggcgaaccgtcgccgtggccgtgctcagaaagccgcaggcatgaaaccgcccgag
gacgaagctgctggctacgtcgaaaaaattgtcgagcgtggcatggctcgcatcatcggc
acttatttccatcatggaaaattcagccacgtgcagcctgacgatgcccagatccctgat
gtgaatattgagcctgtgaagaaaggcgacaaagactcaccgcaaccaaaacccggtcaa
aaggtagccgtggcactcactgtctgggacaatgccaatagcgcaccgagaggtcgcatc
actgaggtgttaggctggcctgacacacctggtgtcgacatgctatccattgtccacaaa
cacggactacgttccgaatttccagattccgtgctcaaggaagccaaagccttcggttcc
gaagtcacggagaaagacaccgccggacgtgacgactggcgcgacatcaccgtgatcacg
atcgacccacatgatgccaaagactttgatgacgccatcagcgttcaaaaaatggacaac
ggcgactggcagctaggtgtgcacatcgccgatgtctcacattacgtgaagcccggcacc
gcactcgacaaggaagccgccgcccgaggcaactcgacttacatggccgatcgcgtcctg
ccgatgattccacgcgagctgtctaaccacctctgctcactcatgccggaagtcgaccgt
ctcactcagtgttgtttaatgcgcatcactcaggacggcaaaatcaaatccgccaaattt
acccgagcagtgatccactccgcgcgacgtttcacatacgaagaggctcaggacattctg
atggctcccgaagatgaagtcgccaaacgcttccctgaagaaaaagaagcgatcacctcg
atgctccatgagtcgtggagactggcctcgatgctgagaaagcgtcgttttgaaaacggt
gctctcgatctcgacatgccggaggttaaggtcttgttagacgaaaagggccaacccact
ggtattgaaaagagcgattacaatgagagccaccagctcatcgaagaattcatgctcatc
gccaacgagtctgcagccaagctgctgaaaaacaaacgtcaaccgacagtttaccgtatc
cacgaagacccggatccggaccgactcaatgaatacgcagagctggctaaacttcatggt
tacaaacccggcgacctgacgaacaaaaagcacattcaagcactgttagacaaagccaag
ggcaccattgaagaacccgccatcaagatcggactgctgaaatcactcaagcgcgctgcc
tatttccaagatccgttaggtcactacggcctgtcgaaggagaactactgtcacttcaca
tcaccaatccgtcgctacgcggacttgatcgtacaccgggccctgcaaaaacacctcggg
aatccgccagccaaagccgaccgcacccccgggccaggtgagatggcacagatcgccctg
cacatttccgaaaccgagcgcaccagcgcggaggcggaaaacgaatcacgccgtctgaaa
atgctgcagtatcttcacatgtgcacgttggaaaaagatccaccaaccttcaacgtcgtg
atcaccgaggtgcgtcacttcggtctcttcgtcgaagctgttgacatccaaaccaaaggc
ctcgtcaaagttgaagacttaccgccgctcaaaggcggcaaagaatggaaatttgaagcg
aacctgatgcgcttcaccggtccctacgagcaaatgttcaccgtcggacagcaacacctc
tgccacgtcgcacacgtcgatatggaacaacaacgagtagacttcaagctggcggacgcg
caacaagagtaa
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