Oceaniferula spumae: NT6N_25650
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Entry
NT6N_25650 CDS
T11191
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
osu Oceaniferula spumae
Pathway
osu03410
Base excision repair
osu03430
Mismatch repair
osu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
osu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NT6N_25650 (recJ)
03430 Mismatch repair
NT6N_25650 (recJ)
03440 Homologous recombination
NT6N_25650 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
osu03400
]
NT6N_25650 (recJ)
DNA repair and recombination proteins [BR:
osu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NT6N_25650 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NT6N_25650 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NT6N_25650 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BDS07525
UniProt:
A0AAT9FND1
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Position
complement(2951751..2953469)
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AA seq
572 aa
AA seq
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MSHKQSQWILAEVPEIPPDVDDRIPEILVRMMCQRGVEIQQMERFLHPRLKDLNDPFLLP
DMKAAVDRILQAVDLGQEVCVYGDYDVDGITSVTLLTRVLRAYGVSTRSFIPRRGPEGYG
LNEAALKRCMEDGPKPDLLVTVDCGTASLSEIELLTSQGVDVIVVDHHEPPPQGQPECVA
VVNPKCASLVPEQTGEAFDYLCAAGVVFKLAHALLKTRMVDTFDLKEHLDLVALATVADI
VPLVDENRLLVRHGLKFLAKTKNEGLKALMEVAQVKGPLTSADVGFRIGPRINAAGRMDR
PEDALATLTTADRAEAISLANTLDGHNRTRQGEELRIHKDALKRLETECDPNDPVIVLGS
RDWHPGVVGIVASRMMRRFHKPAFIIAIDEHGLGKGSGRSIGGVSLMDAINANRDLLEAG
GGHAMAAGISVHEDKIDAFRKGFADYVTSNVSEDDRKPRLHLDAEIDFPALSLDFLKSYE
LLQPFGASNPEPLFMTREVWLTEPPQELKNHHLRLSMKQKECWKNAMFFGAGQRDLPEQP
WDIAFTINRNVFRGRTSLQIVIQDVRAHQKSD
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgagtcacaagcagtcacaatggatcctcgccgaggtccccgaaattccacctgatgtg
gatgatcgtattcccgaaattctggtgcgtatgatgtgccagaggggggtggaaattcag
cagatggaacggtttctccatcctcggctgaaggacctgaacgatccctttctactgcca
gacatgaaggctgcggtggatcggatcctgcaggctgtcgaccttggccaagaggtttgt
gtctacggtgattacgatgtcgatggcatcacctcggtcaccttgctgactcgtgtcttg
cgggcctatggtgtctcaacacgtagtttcattccgcgccgtgggccagaaggatacggg
ctcaatgaagcggcgttgaaacgttgcatggaggacggcccaaagcctgatctgttagta
acggtcgactgtggcacggcatcactttctgaaatcgaactgctcacttctcagggggtt
gatgtgatcgtagtggatcatcacgaaccgccaccacaggggcaacctgaatgcgttgcg
gtagtcaatcccaagtgcgcgtcgctcgtcccagaacagaccggagaagcatttgattac
ctctgtgccgctggagttgtcttcaagctggctcatgccctgctgaagacacgcatggtc
gataccttcgacctcaaggagcatctggatttggtagcgcttgccaccgtcgcggacatt
gtgcctctggtggatgagaatcgtctgttagtgcgtcatggattgaaattcctcgccaag
acgaagaacgaaggcttgaaggcgttgatggaagtggctcaagtcaaagggccccttacc
agtgccgatgtcggatttagaatcgggccacgtatcaatgccgccggccgcatggaccga
cccgaagatgctctggcgacactgactaccgcggaccgcgccgaagcaatctcgctagct
aacactctcgatgggcacaatcgcacccgccaaggtgaagaattgcgtatccacaaggac
gcactcaagcgactggaaaccgagtgcgatcccaatgatccggtgattgtgttaggttca
cgcgactggcacccgggggtagtcggaatcgttgcctcaagaatgatgcggcgctttcac
aaacccgctttcatcatcgccatcgatgagcatggacttggtaagggaagtggtaggagc
atcggtggagtttcactgatggatgccatcaacgccaatcgtgacttgttagaagccgga
ggcggacatgccatggcagcaggtatcagcgtgcacgaagacaaaatcgatgccttccgc
aaaggttttgccgactatgtcaccagtaacgtcagcgaggacgaccgcaagcctaggctc
cacctggatgccgagattgatttcccggccttgtctctcgacttcctgaaaagctacgaa
ctgctacaacccttcggtgcttcaaaccctgaacctctgttcatgacccgcgaagtctgg
cttaccgaaccgccgcaagaactcaaaaaccaccacctccgcctttcgatgaaacagaag
gagtgctggaaaaatgcaatgttcttcggcgcaggtcagcgtgatttgccagagcagcca
tgggatatcgcattcactattaacaggaatgttttccgaggtcggactagcctgcaaatt
gtcattcaggatgtgagggcgcatcaaaagtcagactaa
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