Oceaniferula spumae: NT6N_30130
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Entry
NT6N_30130 CDS
T11191
Symbol
rhlE-2_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
osu Oceaniferula spumae
Pathway
osu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NT6N_30130 (rhlE-2_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osu03019
]
NT6N_30130 (rhlE-2_2)
Enzymes [BR:
osu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NT6N_30130 (rhlE-2_2)
Messenger RNA biogenesis [BR:
osu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NT6N_30130 (rhlE-2_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_19
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
BDS07973
UniProt:
A0AAT9FPQ6
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All DBs
Position
3474079..3475368
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AA seq
429 aa
AA seq
DB search
MSFQSLGLHKRILQATDDAGYTTPTPIQAKTIPAILTGRDLIGLAQTGTGKTAAFTLPLL
SQLVENNHELTERAARVLIIAPTRELVQQINDSIRTYGKFTNLRTAIVMGGASEKHQIEK
LKSNVDIVIATPGRLMALMQDGHCNFGKLTHLVLDEADRMLDMGFLPDIQEITASLPKRR
QSLLFSATFPQQVERLSKSILKDPQTIEIGERSNPAETVDQYLYPVPQHLKAPLLIHLLE
DHQFFSVITFVRTREDADTLTKELRGAGIEAEAIHSDRSQNHRARALRDFKASKLRVLVA
TDIAARGLDIPNVTHVVNYDFPGQSDDYIHRIGRTGRAGAEGCAITFITDNDGERLKKLE
RHIGKTLARRTAEGFNYKVPAPEEEKDKRFVKRQPKRHSSDRFENSPRGKAKKTAKKTAK
KRTDWRKRK
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgtcattccagtcactagggcttcacaaacgcattcttcaggccactgatgatgccggc
tacaccacccccacgcccattcaggccaaaactatccccgccattctcaccggccgggac
ttgatcggtctggcccagactggcaccggaaagaccgccgcattcaccctgccgctgctt
tcccaactggtggaaaacaatcacgaactcactgagcgggcggcccgcgtgctgatcatc
gctcccacccgcgagctggtgcagcagatcaacgacagcatccggacctacggaaaattc
accaacctccgcaccgccatcgtcatgggcggggcgagtgaaaaacatcagattgaaaag
ctgaagagcaacgtcgacattgtcatcgccaccccaggccgattgatggcattgatgcaa
gacggccactgcaactttggaaaactcacccacctcgtgctggatgaggccgaccgaatg
ttagacatgggttttctgcccgacattcaggaaatcaccgccagcctgcccaagcgccgc
cagagcctgcttttctccgccaccttcccccagcaagtggagcgactttccaagtccatc
ctcaaagacccgcaaactatcgagatcggcgagcgcagcaacccggctgaaacggtcgac
cagtacctctaccccgtgccgcagcacctcaaggcacccttgctgattcatttgttagaa
gaccaccagttcttctccgtcatcaccttcgtgcgcacccgcgaggatgccgatactctc
accaaagaactgcgcggtgccggaatcgaagctgaagctattcacagcgatcgatcccaa
aaccaccgcgcccgagcactgagagatttcaaagccagcaagctccgggtgttagtcgcc
accgacatcgccgcgcgcggactggacatccccaacgtcacccacgtggtgaattatgat
ttcccaggccagagcgacgactacatccaccgcattggccgcaccggtcgggcaggagcc
gagggctgcgccattaccttcatcaccgacaacgatggcgaacgcctcaagaagctagag
cgccacatcggcaaaactctggccagacgcacagcagaaggtttcaactacaaggtgcca
gcaccagaggaggaaaaagacaaacgcttcgtcaaaaggcagcccaaacgccactcatcg
gatcgttttgaaaactcacctcgcggcaaagcgaagaagaccgccaagaagacggcaaaa
aagcgcacggactggcggaagcggaagtag
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