Orbus sturtevantii: RHO12_00505
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Entry
RHO12_00505 CDS
T10535
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
osv Orbus sturtevantii
Pathway
osv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
osv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
RHO12_00505 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
osv03400
]
RHO12_00505 (sbcB)
Enzymes [BR:
osv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
RHO12_00505 (sbcB)
DNA repair and recombination proteins [BR:
osv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
RHO12_00505 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RHO12_00505 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RHO12_00505 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Chromo_2
Motif
Other DBs
NCBI-ProteinID:
WVD66270
LinkDB
All DBs
Position
complement(117940..119370)
Genome browser
AA seq
476 aa
AA seq
DB search
MSDITQPSFYFHDYETFGTDPAFDRPAQFAGIRTDHELNIIEEPLIIYCKQATDYLPNPE
AVLITGITPQETIKRGICESEFAQKIHAAFSQPNTCIIGYNNIRFDDEVSRNIFYRNFYD
PYAYSWKNGNSRWDLLDIVRACYALRPEGINWPTNKDGYASFRLEHLTTANNISHQQAHD
AMSDVYATIEMAKLIKQQQPKLFDYFFQLRNKNNIINLIDIVNMTPLVHVSGMLGAHRGN
TTLVVPILWHPSQNNAVIVCDLAGDIDLLLSLDVEQIKDQLYTKNEDLTDGESRIPLKLI
HINKCPVIAPVNTLSSENANRLSINLANCQQALSKIIAARELLQQKIQLVFSEQPTYKTD
LDVDGLIYQGFFDQHDKSLAEQIRETDLDQLNSLTINPHDNRLKALFFRYKGRNYPEQLS
DNEKIQWQDHCRDKLNSEVIHHYLVTLENLALQYQHQPKKLALLKDLYNYCQYLAC
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatattacacaacctagcttttactttcatgattatgaaacgttcgggacagat
cctgcttttgatcgccctgctcagtttgcgggaatacgaactgatcacgagctaaatatc
attgaagagccattaatcatttattgtaagcaggcaacagattacttacctaatccagaa
gcggtacttattacaggaattacgccacaagaaacgattaaaagaggcatatgcgaatct
gaatttgcacaaaaaattcatgcagcatttagtcagccaaatacttgtattattggctac
aataatattcgctttgatgatgaggtttcacggaatattttttatcgtaatttttatgat
ccttatgcgtatagctggaaaaatggtaattcaagatgggatctattagatattgttaga
gcctgctatgctttacgccctgaaggtattaattggcccaccaataaagatggttatgct
agttttcgtttggaacacttaactaccgccaataatatcagtcatcaacaagctcatgat
gcgatgtctgatgtttatgcaacaattgagatggctaaactcattaagcaacaacagcct
aaattatttgactattttttccaactgcgcaataaaaataatattataaatttaattgat
attgtaaacatgacaccattagttcatgtatctggtatgctaggcgctcaccgaggtaac
accacattggttgtacctattttatggcatcctagtcaaaataatgccgttattgtatgt
gatttggctggcgatattgatctgcttctatcattagatgtagagcaaataaaagatcaa
ctatatacaaaaaatgaagatttaaccgatggtgaatctcgtattccactaaaattaatt
catatcaataaatgcccagttatcgcaccagtaaatacattatcgtcagaaaatgctaac
cgtctatcaataaatttagctaattgccagcaagcattaagcaaaattattgcagctaga
gagcttcttcaacaaaaaattcaactcgttttctctgagcaaccgacttataaaacagat
cttgatgttgacggactgatctatcaaggtttttttgatcaacatgataaatcgctagcg
gagcaaatccgcgaaacggatcttgatcagttaaattcgttaacgattaatcctcatgat
aatcgattaaaagcgcttttttttagatataaagggcgcaattaccctgaacaattaagt
gataatgaaaaaattcagtggcaggatcattgtcgagataaactaaatagcgaagtcatt
caccattatttagtgacccttgaaaacttagcactacagtaccagcaccaaccaaaaaaa
ttggcgctgttgaaagatctttataattactgtcaatacttagcttgctaa
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