Orbus sturtevantii: RHO12_02230
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Entry
RHO12_02230 CDS
T10535
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
osv Orbus sturtevantii
Pathway
osv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
osv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RHO12_02230 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
osv03400
]
RHO12_02230 (mfd)
Enzymes [BR:
osv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RHO12_02230 (mfd)
DNA repair and recombination proteins [BR:
osv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RHO12_02230 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
MFD_D3
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
DUF6007
Motif
Other DBs
NCBI-ProteinID:
WVD66599
LinkDB
All DBs
Position
complement(527422..530871)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPNIILPNAQGEIQEFGQLVGSSISLFCAKILSLHQGPVVIITDDMQQTTRLHEELKQYS
SIPTMLFPDWETLPYDSFSPHQDIISQRLSCLYQIPTLKKGALILPVNTLMQKICPSSYL
SAHVFIMQKGQHISREGLRSQLENAGYRSVNQVMEHGEYATRGALFDVYPMGSSVPYRLD
FFDDEIDSIRIFDVETQRTLDEIDNIQLLPAHEFPFDKAAIELFRSQWRENFAVRLEAES
IYQQVSKNILPTGIEYWQPLFFNEPLASLFNYLPNNTLLINTQNIHQFAEKYWQDIQNRY
ESRNVDPMRPLLKPEQIWLKVDEVFAKFKHYPRVIISNEKITSKKAQNLGYEALPELAIQ
IQQKDPYHHFQQFLQNYHHKIIFSVESQGRREALQDVLGRIKIYPNYIETASEIETATQQ
FYLMVGASEQGFIDVDNQFALVTENELFGRRIIRRKKEAKQAINTDNLIRSLAELTPGKP
VVHLEHGVGRYSGLTTLETGGISAEYLIIIYANETKLYVPISSLNLISRYSGGDEETAPL
NKLGSDAWSKAREKAAEKIRDVAAELLDIYAQRETKPGFEFKQDREQYELFCQGFAYQET
DDQLNAIGAVISDMCTPIAMDRLVCGDVGFGKTEVAIRAAFLAVINHKQVALLVPTTLLA
QQHYENFCDRFANWPIRIEALSRFKTAKQQQKILADLQDGKVDIVIGTHKLLQTDVKWRD
LGLLIVDEEHRFGVRQKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR
RLAVKTFVREYDSYVIREAILREILRGGQVYYLHNDVADIENSQKKLQELIPEARIAIGH
GQMHERELERVMNDFHHQRYNLLLCTTIIETGIDVPNANTIIIERADKFGLAQLHQLRGR
VGRSYHQAYAYLLTPPPKALTKDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLGED
QSGQIEAIGFNLYMELLDEAVKSLRQGKQPSLESLLSNQQVDIELRLPTLIPDDFIADVN
TRLSLYKRIASIEELEELSDIKVEIIDRFGRLPEPVQFLLDVTKIRFNAQRLGINKIELG
EKGGYIEFGANNQVSVDYLIGEIQKDPKRYRLDGQNRLKLLKTDLQRQQRIDYINTLLSQ
FAMHCANEQ
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcctaatattatactgcctaacgcacaaggagaaatccaagagtttggtcaattagtc
ggctcatcaatttcactattttgtgcgaaaatactgtcacttcatcaaggccccgttgta
attattactgatgatatgcaacagacaacacgtctacatgaagaactcaagcaatactcc
tcaatacctactatgttatttcccgattgggaaacattgccttatgatagtttttctcct
catcaagatattatttcgcagcgattatcatgtctttatcaaatcccgaccttaaaaaaa
ggcgccttgatccttccggtaaataccttaatgcaaaaaatctgcccaagttcttattta
agtgcgcatgtttttattatgcaaaaagggcaacacatctctcgagaaggtttacgatcc
cagctcgaaaatgctggctatcgtagtgttaaccaagtaatggaacacggcgagtacgcc
actcgaggcgcacttttcgatgtttatccaatgggtagcagtgtcccctatcggctcgat
ttttttgatgatgaaatcgatagtattcgtatttttgacgttgaaacacaacgaacctta
gatgaaatagataatattcaattattaccagcacacgaatttccatttgataaagccgca
atagagctatttcgtagccaatggcgagaaaactttgcagtcaggcttgaagcggaaagt
atctatcagcaagtcagcaaaaacattctacctactggcattgaatactggcaaccgctg
ttttttaatgaacccttggcctctctttttaattacttacctaataatactttattaatt
aatactcaaaacattcatcaatttgccgaaaaatattggcaagacattcaaaaccgttac
gaaagtcgcaatgttgaccctatgcgaccgttgcttaaacctgaacaaatttggttaaaa
gtcgatgaagtttttgccaaatttaaacactaccctcgcgtaattatcagtaatgaaaaa
ataaccagtaaaaaagcacagaacttgggctatgaagcgttacccgagctcgcaatacaa
attcaacagaaagatccttatcaccattttcaacagtttttacaaaattatcatcataaa
attattttttctgttgaatcacaaggtcgtcgtgaagcgctacaagatgttcttggtcga
ataaaaatttatcccaactatattgaaacagcgagtgaaattgaaacggctactcaacag
ttttatttaatggttggagccagtgaacaaggctttattgatgttgataaccaatttgcc
ttagtgactgaaaatgaattattcggtcgccgcattattcggcgtaaaaaagaagctaaa
caagcgattaatactgataatttaattagaagcttagctgagttaacaccaggtaaacca
gttgttcatttagagcatggtgtgggtcgatattcaggactcacaacacttgaaaccggc
ggaatatccgcggaatatttgattataatttatgctaatgagacaaagctttatgtccct
atttcatcactaaatttaattagtcggtattctggtggtgatgaggaaaccgctccactc
aataaattaggttctgatgcttggagcaaagctcgcgaaaaagcagccgaaaaaatcaga
gatgtggcagcggaactacttgatatttatgcccagcgagaaaccaaaccaggctttgaa
tttaaacaagaccgcgagcaatatgaattattttgccaaggattcgcttaccaagaaacg
gatgatcaacttaatgcaattggtgccgtgattagtgatatgtgtacgcctatcgcgatg
gatcgcttggtctgtggtgatgttggttttggtaaaacagaagttgcgatccgtgcggct
tttttagctgtgataaatcataagcaagttgccttattagtcccaacaaccttacttgct
caacaacattatgaaaatttttgcgaccgatttgccaattggcctattcgcattgaagca
ttatctcgttttaaaacggctaagcagcaacaaaaaatattagccgatttacaagacggt
aaggttgatattgttataggtacccataaactactacaaactgatgtaaaatggcgtgat
ttaggcttactcattgtcgatgaggagcatcgttttggggtaaggcagaaagagcgcatt
aaagcgatgagagctaacgttgatattttaactttaacagcaacgccaatcccaagaacc
ctcaacatggcaatgagtggtatgcgtgatttatcgattattgccaccccaccagcgcgt
cgcttagccgttaaaacatttgtccgagaatacgatagttatgttatccgtgaagccatt
ttgcgtgaaatattgcgtggtgggcaagtgtattacctgcacaatgatgtagctgatatc
gaaaatagccaaaaaaaattacaagaactcattcctgaagcacgtattgcaattggccat
ggtcagatgcatgaacgcgaacttgaacgcgtaatgaatgattttcatcaccaacgttat
aatctactgctttgcactacaattattgaaacagggattgatgtacctaacgctaatact
attattattgaacgagcagataaatttggtttagcacagttacatcagttaagaggacgg
gttggccgctcttatcatcaagcttacgcttatctattaacaccgccaccaaaagcatta
actaaagacgctaaaaaacgcttagaagctatcgcttcattagaagatttaggggcaggc
tttgcgttagccactcatgatttagagattcgtggagcgggtgagttattaggcgaagac
caaagcggccaaattgaagcaatcggttttaatttatatatggaattgcttgatgaagcc
gtcaaatcgttaagacaaggcaaacaaccatcactagaatcattattaagtaatcaacaa
gtggacattgagctacgtttaccaacactaattccagatgattttattgctgatgtcaat
acccgcttatcgctttataaacgcattgccagtattgaagagcttgaagaactcagtgat
ataaaagttgaaataattgatcgatttggtcgtttacccgagcctgtacaatttttatta
gacgtaactaaaattagatttaatgcccagcgattaggcataaataaaatcgagttaggg
gaaaaaggtggctacattgaatttggcgctaataaccaagtttcagtcgactacttaatt
ggtgaaatacaaaaagatcctaagcgctatcgcctagatggacagaatcgattaaaacta
ttaaaaactgacttacaaaggcaacaacgtattgactatatcaatacactacttagccaa
tttgctatgcattgtgctaacgagcaataa
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