Orbus sturtevantii: RHO12_11010
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Entry
RHO12_11010 CDS
T10535
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
osv Orbus sturtevantii
Pathway
osv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
osv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RHO12_11010 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osv03021
]
RHO12_11010 (rpoD)
Transcription machinery [BR:
osv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RHO12_11010 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF16
YL1
D27-like_C
TMPIT
Motif
Other DBs
NCBI-ProteinID:
WVD65882
LinkDB
All DBs
Position
complement(2501197..2503035)
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AA seq
612 aa
AA seq
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MEQNSQSQLKHLIIRGKELGYLTYADVNDHLPEEIIDSDQIEDIIQMINDMGIQVLEEAP
DTDEMLLSDNVADEEAVEAATALVLSNVESEIGRTTDPVRMYMREMGAVELLTREGEIDI
AKRIEDGINQVQTSVSEYPEAITYLLEQYNLVEQGTVRLSDLITGFVDPNAEEGLDELPE
ELEDKESDDIDLDEDDDDDSESDSSDDDTSIDPEVARAKFAELKEQHEKTSEAIKKHGRA
HKKAQQEIENLSEVFKQFRLVGKQFDILVNSMREMMERVRTHERIIMKICVEQCKMPKKQ
FMTHFTGNENNISWFEKASKSKNTFASKLQEFEAEIKEQATELQHIETETNLSIEQIKDI
NRRMSIGEAKAKRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQEIGREPTPE
ELSEKMQMPEDKIRKVLKIAKEPISMETPVGDDEDSHLGDFIEDTAIEQPLDAATSESLR
AATRDILSGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSDVLRSFLDE
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagcagaactctcaatcacaactaaaacatctgattatccgaggtaaagaactcggg
tatctaacttatgcagatgtcaacgatcatttaccagaagaaatcatcgattccgatcaa
atcgaagatattattcagatgataaatgatatgggaattcaagttcttgaagaagcccca
gatacagatgaaatgcttttatcagataacgttgctgatgaagaagctgttgaggcggca
actgccttagtattatctaacgttgagtcagaaattggccgtactaccgaccctgttcga
atgtatatgcgcgaaatgggtgctgttgagttattaacacgggaaggtgaaatagatata
gccaaacgtattgaagacggtatcaatcaggtgcaaacctcagtatctgaatacccagaa
gcgataacttaccttttagagcaatataatttagtcgagcaaggaaccgttcgtctttca
gatttaattacagggtttgtggatccaaatgctgaagaaggcttagatgaactgcccgaa
gagcttgaagataaagaatcggatgatatcgaccttgatgaagatgacgatgatgatagc
gaatcagactcaagtgatgatgacacatctatcgatcctgaggtagctagggctaaattt
gctgaattaaaagagcagcatgaaaaaacgtccgaggcgattaaaaagcatggtcgtgca
cataagaaagcgcagcaagaaattgaaaacttatccgaggtatttaaacaatttcgctta
gttggcaaacaattcgacattctagtcaatagtatgcgtgaaatgatggagcgagttaga
actcacgaacgcattattatgaaaatttgcgttgagcaatgtaaaatgcctaaaaagcaa
tttatgacacattttacgggtaatgaaaacaatattagttggtttgagaaagcgagcaaa
tcaaagaatacatttgccagcaaattacaagaatttgaagcagaaattaaagaacaagct
accgagctgcaacacattgaaactgaaacaaatttgtcaattgagcaaattaaagatatc
aaccgacgtatgtcgattggagaagccaaggctaaaagagcaaaaaaagagatggtagaa
gctaacttacgtttagtgatctctattgccaaaaaatacactaaccgtggactgcaattt
ttagaccttattcaagaaggtaacattggcttaatgaaagcggtagataaatttgaatat
cgccgcggttataaattctcaacttatgcgacttggtggattcgtcaggctattacacgc
tcaatagctgaccaagctcgaactatccgtattcctgttcatatgattgagacaattaat
aagctaaatagaatttcacggcaaatcttacaagaaattggccgcgaaccgactcctgaa
gagttatcggaaaaaatgcaaatgccagaagataaaattcggaaggtattaaaaattgct
aaagaaccaatctcaatggaaacgcctgttggtgatgatgaagattctcatttaggtgat
tttattgaagatacagcaatagagcagccacttgatgccgctacatcagaaagtttacgc
gcagcaacaagagatattctatcgggtttaacgccaagagaagcaaaagtgttgcgcatg
cgttttggtatcgatatgaacaccgatcatacactcgaagaagtgggtaaacaatttgat
gtaacaagagagcgtatccgccaaattgaggctaaagcgttacgtaaattacgccaccct
agccggtcagatgtattacgtagtttccttgatgagtaa
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