Ostreococcus tauri: OT_ostta01g00100
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Entry
OT_ostta01g00100 CDS
T01358
Name
(RefSeq) Exonuclease, RNase T/DNA polymerase III
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
ota
Ostreococcus tauri
Pathway
ota03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OT_ostta01g00100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ota03019
]
OT_ostta01g00100
Enzymes [BR:
ota01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
OT_ostta01g00100
Messenger RNA biogenesis [BR:
ota03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
OT_ostta01g00100
mRNA degradation factors
3'-5' decay
Pan complex
OT_ostta01g00100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
RNase_T
PAN2_N
UCH
WD40_Prp19
Beta-prop_WDR90_POC16_2nd
Motif
Other DBs
NCBI-GeneID:
9832453
NCBI-ProteinID:
XP_022838114
OrcAE:
OT_ostta01g00100
UniProt:
A0A090M395
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All DBs
Position
1:16094..20050
Genome browser
AA seq
1318 aa
AA seq
DB search
MAHLYGAGADPPGGYGDGAQYGAAQPGAVLPSFPFDACTTLQTELLEEGHAPPAITSCGF
DCGEELLWCGTEDGWITAMYAPTLARHVSVEAHAHAVTQIVPLACGALSLSASSVKFHTS
GGIETLTCASCDGEQNALKALAYQHPHGRMAGKVYVGRAAPVIEQYDLTRGVLIKSTELK
HACEKLNWGTQRGLLVAGQENGELSFRDTRNGLRQELMATAHGLGSVTGITGKGDLVVTC
GTTTRAGQVVVDQFIKVFDVRYSARLLNQIQFPSGPVSVEFNHGYESPTLSVVGYTGAVQ
TLDVVNPAVIPYTYQIDTHGASIIGQAVSSTGELVAFNDDSGWVHVYASGEESYVNAESF
PTAPVDEYALSQQEFQLPDDLTACGLTAEEINPAKGEFKSNSSLQGARVIETKKKGLPKM
YARVECNRSALTAERRYEEFDFSTYNKTRLPGLTNDLANCYVNPVLQILHFVPELRSKVL
AHTCEREFCLTCEMSFLSHMLSTCPPGLATQPLNFLRTLRQIREAAALGLIEGRDELEAR
AEHSPIRRVQAFLRFILEQLNKEELSRRQALGDVAPTGQTACESIFGTISKETLKCTQCA
VTTAKETRNFQVDLQYPTVRDGQRPSFVDLLKRSLDVSQEMRAWCEGHKAYTRMKQNRLP
LSLPTVLSVNLGMADLKDLHWWGVDSSAGPTADAFGGKLHERWLPHVIQISLDVDSKILE
VKHALDPSQFTAAPNSTVYELTGLVAFSRNIDDEIKKGSDLRQTKSADISGHLVSFIKVR
PPYVDVSGDFTASPKKPGSTPGVSPLGNAGAVKTTEVSESSTFAPTKAPITANPSTPSVS
RTSAPGSVNEWLLFNDFVVSQVSKDEVTQLYGQLKIPCLCMYTKVEKPAPLPLPPSPITF
ELYKKVTHGMSVPRGVPFVPFSCVGEDTPGPGMLLGIDAEFVSLAPAIMAVRDDGTEYES
VPARLGLARVSVVRGQGQQKLTPIIDDYIRAVEPVHDYLTRFSGLVPGDLDPATSPHFIT
QLKHAYLKLRYLIDAGCIFVGHGLKQDFKMINIVVPPDQVIDTVELFHFKRQRKLSLKFL
ATNLLGEEIQGETHDSIEDARTAIKLYETYLDLQARGEFESELLEIYRFGKKFGFKGETT
NEETNPSDAGLMSAESWTNLQQDMSALGMSDDGGVSLQDFAQSRQSRFGIESHQRSAPPP
IAMPFTPQMAPQMAPQMTPQMAPQMTPQMAPQMAPQMTPQMTPAQLSQMLGIGFGHAQPV
RTGLHMGSNPVPMQQTVPMPPGAPPMPPMQMGAGVPRPMHAPPPPPFPPGPPGRQWGT
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacctatacggcgcgggcgcggacccaccgggtggatacggtgatggtgcgcag
tacggagctgcgcagcccggcgcggtgcttccgtcgtttccgttcgacgcctgtacgacg
ttacagactgaactcttagaagaaggtcacgctccgcccgcgattacctcgtgcgggttc
gactgcggcgaggaattactgtggtgcggcacggaagacggatggatcaccgcgatgtac
gctccgacgctcgccagacatgtctccgtggaggcacacgcgcatgcggtgactcaaata
gtaccccttgcctgcggggcgctgagcctgagcgcgtccagcgtgaaatttcatacctcc
ggcgggatcgagacactcacgtgcgcgtcgtgcgacggggagcagaacgcattgaaggca
ctggcgtatcagcatccgcacgggcgaatggcagggaaggtttacgtcggaagagcagcg
ccggtgattgagcagtacgacctcacgcgaggcgtattgatcaagtcgaccgagttgaaa
cacgcgtgtgagaagttgaattggggcactcagcgcggattactcgttgctggtcaagag
aatggagagttgagcttccgagacacccgcaacggcttgaggcaggaattaatggccacg
gcgcacgggttgggaagcgtcacgggcatcacgggaaagggtgatctcgtggtcacgtgc
gggactacgacgagagcggggcaggtcgtggtggatcaattcatcaaagtttttgatgtg
cggtatagcgcgagattgctcaatcagattcaatttccctcgggtccggtttccgtggag
tttaatcatggttatgagtctccgactctcagcgttgtggggtacacaggcgctgtgcag
acactcgatgtcgtgaatccggcagtgattccgtacacctaccaaatagacacgcatggg
gcatcaattattggacaagctgtgtcctccaccggcgaactcgtggcgttcaacgatgac
tcaggatgggttcacgtgtatgcctcaggtgaagaatcgtacgtgaacgctgaatcgttc
ccgaccgcaccggtggatgaatacgccctttctcaacaggagtttcaattaccagatgat
ctcacggcatgcggtctgaccgcggaggagatcaatccagcgaagggggaattcaagtcc
aactctagtttacagggcgccagggtgatagagacgaagaagaagggactccctaaaatg
tacgcacgtgtcgagtgcaatcggtcggcactgactgctgaaagacgctacgaggaattt
gatttttcgacgtacaacaaaactcgtttgccgggtcttacgaacgatttggcaaattgt
tacgtcaatcctgtcttgcaaattttgcactttgtcccagagctgagatcaaaggtgctg
gcacacacctgtgaacgcgagttctgtctcacgtgtgagatgagcttcttgtcgcacatg
ctgagcacgtgtccaccaggtctcgcgacgcaaccactgaattttttacgcaccctccgc
caaattcgtgaggctgctgctcttggattgattgagggcagagatgagctcgaagcccgc
gctgagcactcacctattcgtagagtgcaagcattccttcgatttattttggaacagctg
aataaagaagagctgtccagaagacaagccctcggtgacgtcgcgccaaccgggcaaacc
gcatgtgagtctatctttggcaccatttcaaaggagacactcaagtgcacgcagtgcgct
gtgacgacggcgaaggaaacgcgaaacttccaggtcgatctgcaatatccgactgtacgc
gacggtcagcgcccgtcattcgttgacctgcttaagaggtctctagatgtttcgcaggaa
atgcgtgcctggtgcgaaggtcacaaggcgtacacgcgaatgaagcaaaatcggcttcct
ctctcactcccgactgtgttgtcagtaaatcttggtatggccgatttgaaggatttacat
tggtggggagtcgactcgagtgcgggtcctaccgcggatgcgttcggtggcaaattacac
gagcgctggctaccgcatgtcattcagataagtctcgacgtggattcaaaaatactggaa
gtgaagcacgccttggacccttcgcagttcacagctgcgccaaattcgaccgtgtacgaa
ctgaccgggttggtcgcgttcagtcgaaatatagacgacgaaattaagaagggctcagat
ttgcgtcagacgaagagtgcggacatctctggtcatttagtcagtttcatcaaagtcaga
ccgccgtacgtggatgtctcaggagatttcacagcgtcgccgaaaaagccgggaagtact
ccgggagtttctccgcttggtaacgccggcgccgtcaaaacgacagaagtatcagaatcg
tcgacgttcgcgccaacgaaagcgccgatcacagcgaatccgagcactccgtcggtgtct
cgcacttcggcgccgggcagtgtcaatgaatggcttttgttcaatgattttgtcgtgagt
caggtctcgaaggatgaagtcacgcaactctacggacagttgaagataccttgtctgtgt
atgtacaccaaggtagaaaaacccgcgccactgccgctaccaccgtcgccgatcacgttt
gagctgtacaagaaggtgacgcacggaatgtccgttccgcgcggtgttcctttcgttcct
ttctcgtgcgtcggcgaagacacgcctggtcctggtatgctgctgggcattgatgccgag
ttcgtatcacttgcgccggcaatcatggcggttcgcgacgatggtactgagtacgagtct
gtcccggcacgcctcgggctagctcgagtctccgtcgtgcgcggtcagggacagcaaaag
ttgacgccgatcatcgacgattacattcgggcggtcgaacccgtgcacgattatttgacg
cgttttagtggattggttccaggtgatttagatcccgcgacaagtccacacttcatcaca
cagctcaaacacgcgtacttgaagcttcgatatttgattgacgccgggtgtatcttcgtc
ggacatggcttgaagcaagactttaagatgatcaacatcgttgttccgccagaccaagtc
atcgatacggtggagctgttccacttcaagcgccagcgtaaactctctctcaagtttctg
gccacgaatctcctcggggaagagatccagggcgaaacgcacgattcgattgaagacgcg
cgcacagccatcaagctttacgaaacgtatctcgatttgcaagcgcgtggagagtttgaa
tcggagctgttagagatatacaggtttgggaagaaatttggtttcaagggagagacgaca
aacgaagaaacaaacccaagtgatgcaggtttgatgagcgccgaatcctggacaaatttg
cagcaggacatgtcggctctcgggatgtctgatgacggtggagtgtcattacaagatttc
gcgcagtctcgacagtcccggttcggcatcgaatcgcaccaacgatccgcaccaccgccg
atagccatgccgtttacgccgcaaatggcgccgcaaatggcgccgcaaatgacgccgcaa
atggcgccgcaaatgacgccgcaaatggcgccgcaaatggcgccgcaaatgacgccgcaa
atgacgcccgcacaactgagtcaaatgctcggaataggattcggccacgcgcaacccgtt
cgcactggcttgcacatgggatctaatcccgtgccaatgcaacaaaccgtgccgatgccc
cctggagcgccgccgatgcctccgatgcagatgggcgcaggtgtgcctcgtccgatgcac
gcgcctccgcctccgccttttccgccggggcctccaggtagacagtggggaacgtga
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