Ostreococcus tauri: OT_ostta01g03100
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Entry
OT_ostta01g03100 CDS
T01358
Name
(RefSeq) Helicase, C-terminal
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ota
Ostreococcus tauri
Pathway
ota03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OT_ostta01g03100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ota03041
]
OT_ostta01g03100
03009 Ribosome biogenesis [BR:
ota03009
]
OT_ostta01g03100
Enzymes [BR:
ota01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OT_ostta01g03100
Spliceosome [BR:
ota03041
]
Complex A
U2 snRNP components
U2 related factors
OT_ostta01g03100
Complex B
OT_ostta01g03100
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
OT_ostta01g03100
Ribosome biogenesis [BR:
ota03009
]
Eukaryotic type
90S particles
Helicases
OT_ostta01g03100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
HA2_N
Helicase_C
AAA_22
AAA_19
AAA_30
nSTAND3
SRP54
Flavi_DEAD
T2SSE
ABC_tran
TsaE
ATPase
NACHT
AAA_7
AAA_29
Motif
Other DBs
NCBI-GeneID:
9836522
NCBI-ProteinID:
XP_003074367
UniProt:
Q01GC6
LinkDB
All DBs
Position
1:complement(491038..493134)
Genome browser
AA seq
698 aa
AA seq
DB search
MSERDEKSPKKPKTTCVDERGGTNPHTGLALSDRYYDILSKRKTLPVWLQKEEFAATLAK
NQTMILVGETGSGKTTQVPQFVVDSGYTTDGKMCVCTQPRRVAAMSVAKRVADEMDVNIG
EEVGYSIRFEEATGPRTVLKYATDGMLLREAMTDPLLSRYSVIVIDEAHERTLATDILFG
LLKEILIKRKDLKCVVMSATLEAEKFQGYFLDAPLMKVPGRMHPVEIFYTQEPERDYLEA
SIRTVTQIHQCEPPGDILLFLTGEEEIEDACGKIRREIQNLGDEVGVVNVVPLYATLPPA
MQQKIFDKAPEGKPGKPPGRKIVVSTNIAETSLTIDGIVYVIDPGFSKQKVFNPRIRVES
LLVSPISRASAQQRAGRAGRTQPGKCFRLYTEQSFKKDLQEQTYPEILRSNLGSVVLQLK
KLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDDGELTTVGQVMAEYPLDPQLAKML
VTSCEFKCSNEVLSIVAMLSVPQAFIRPRDQAEQADAAKAQFAHVDGDHLTLLNVYHAYK
QAKEDPDWCWNNYISHRAMKSADNVRTQLVRICQRFNLPLVSTDFAARDYYPNIRKAILS
GYFMQVAHLERGGRYLTVKDNQEVMLHPSTCLDRKPEWVCYNEFVLTSKNYIRTCTDVRG
EWLIDLAPHYYDLSNFPMCSAKEVLKRYYHQRDRDAKK
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagcgcgatgaaaaatcaccaaagaagccgaagacgacgtgtgtggacgagcgc
gggggcacgaacccgcacaccggactcgcgctaagcgataggtactatgacatcctgtcc
aagcgcaagaccttaccggtgtggttgcagaaggaggagttcgcggcgacgctcgcgaag
aaccagactatgattcttgtcggggaaacggggagcgggaagacgacgcaagtgccgcag
tttgtcgttgattcgggatacacgacggatgggaagatgtgtgtgtgcacgcagccgaga
cgtgttgcggcgatgagcgtggcgaagcgcgttgcggatgagatggacgtgaatattgga
gaggaggtggggtactcgattcgtttcgaggaggcgacaggaccgaggacggttttgaag
tacgccacagacggtatgctcctcagggaggcgatgacagatccgctcttgtcgaggtac
tcggtgattgtgatcgatgaagcgcacgagcgaacgctggcgacggacattttgtttggt
ttattgaaggagattttaatcaagcgcaaagacttgaagtgcgtggtcatgtccgccacg
ctcgaggcggagaagtttcaggggtactttttggacgcaccgctcatgaaggtgcccggt
agaatgcatccggtggagatattttacactcaggaaccggagcgagactatttagaggcg
tccattcgaacggtgacgcaaattcatcagtgcgagcccccgggagacattttgttgttc
ttgacgggtgaggaagagattgaggatgcgtgcggaaagattcgacgagagattcagaac
ttgggcgacgaagttggagtggtgaacgttgttccactctatgctacgttgccgccggcg
atgcagcagaagattttcgacaaggctccggaggggaagccagggaagccgccgggacgc
aaaatcgtcgtctccaccaacatagccgaaacctcgttgacgattgatggtatcgtgtat
gtgatcgatccggggttctccaaacagaaggtgttcaacccgaggattcgcgttgagtcg
ctcctcgtttcgcccatctctcgagcctctgcacaacagcgagctggtcgtgccggtcgt
acgcagccgggtaagtgcttccgtttgtacactgagcaatccttcaagaaggatttgcaa
gagcaaacctacccggagattttgcgttcgaatctcgggagcgtggtcctgcagctcaag
aagttgggcatagatgatttagtgcactttgatttcatggatccgccagcgccagagacg
ctgatgcgggcgctagagttgctcaactatctgggcgctctggacgacgacggcgagctc
acaactgttggtcaagtcatggcggagtaccctttggatccgcagctggcaaaaatgctc
gtcacctcgtgcgaatttaagtgctccaatgaagttctgtccatcgttgccatgctctcc
gttccgcaggcgttcattcgcccgagagaccaagctgagcaggcagacgcggcaaaggcg
cagtttgctcacgtggatggcgatcacctgacactactgaacgtctaccacgcctacaag
caggctaaggaagatccggattggtgctggaacaattacatcagtcatagagcgatgaag
agtgcggataacgtgcgtacgcaactcgtgcgcatttgccagcgcttcaacctgccgctg
gtgagcacggattttgctgctcgagattactatccaaacattcgaaaggccatcctgagc
ggttacttcatgcaagtcgcgcacctcgagcgtggtggacgctacttgacggtcaaggat
aaccaggaggtgatgctgcacccgtccacgtgcctcgaccgcaagccggagtgggtatgc
tacaacgagttcgtcctgacgtcgaagaactacattcgcacgtgcacggacgtccgaggc
gagtggctcatcgatctcgccccgcactactacgacttatcaaacttcccaatgtgctct
gccaaggaagtgttgaagcgatattaccaccagcgcgatcgagacgcgaaaaagtag
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