KEGG   Ostreococcus tauri: OT_ostta01g03900
Entry
OT_ostta01g03900  CDS       T01358                                 
Name
(RefSeq) Pre-mRNA-splicing factor 38
  KO
K12849  pre-mRNA-splicing factor 38A
Organism
ota  Ostreococcus tauri
Pathway
ota03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ota00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    OT_ostta01g03900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ota03041]
    OT_ostta01g03900
Spliceosome [BR:ota03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    OT_ostta01g03900
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    OT_ostta01g03900
SSDB
Motif
Pfam: PRP38 PRP38_assoc HIND CoV_nucleocap
Other DBs
NCBI-GeneID: 9836383
NCBI-ProteinID: XP_022838269
OrcAE: OT_ostta01g03900
LinkDB
Position
1:619851..620973
AA seq 335 aa
MANATDPLAKSVRGTDPQNLMERITRDKVYAMTYWKEKCFGVSAEALVDLAVDLRSVGGI
YGGNNRATEFLCLTLKLLQIQPEKEIVLEFIKNEDHKYVRLLGAFYLRLVGKPTDVYRYL
EPLLNDYRKVRYRTRDGKYALTHVDEFVNNLLTKDMFCDVTLPRVPHRQVLEAAGALEPR
VSALEEDIADLEEELESAVEEAIGQRMNMDVDAGEAAAAASTRGAREDGEIVASGSKRSR
EHDGVRYRECDDSDGDRYVRRRERSRSRSRDRVPARRDDARPGVLASGEEMDHREKKEKK
EKKEKREKKEKTEMDPEIAEANAIRAKLGLKPLRG
NT seq 1008 nt   +upstreamnt  +downstreamnt
atggcgaacgcgacggatccgctcgcgaagagcgtccgggggacggacccgcagaacctc
atggagcgaatcacgcgcgataaggtgtacgccatgacgtactggaaggagaagtgcttc
ggcgtgagcgccgaggcgttggtcgatctcgcggtcgacctcaggtcggtgggtgggatt
tacggcgggaacaacagagcgacggagtttttgtgcctcacgctgaagctgttgcagata
cagcctgagaaggagatcgtgttagagtttattaagaatgaggatcacaagtacgtcagg
ttgctcggcgcgttttacctacggttggtggggaaaccgacggacgtgtacagatacctc
gagccgctgttgaacgactatagaaaggttcggtatcgcacgcgtgatgggaagtacgca
ctgacgcatgtggatgagtttgtgaacaatttgttgacgaaggatatgttttgcgacgtg
acgctcccacgcgtgccgcatcgccaggtgttagaggccgcgggagcgcttgagccacgc
gtatctgcgcttgaggaggatatcgcagatttggaggaagagctcgagagcgcggtggag
gaggcaataggtcaacggatgaacatggatgtcgacgcaggcgaggccgctgccgcggcg
tccactcgaggtgcgcgcgaggacggcgagatcgttgcgtcgggatcgaagcgttcgcgc
gagcacgatggcgttcggtatcgagaatgtgacgatagcgacggtgacaggtacgtccga
aggcgcgagcggtcgagatctaggagtcgcgaccgcgtgccggcacgccgcgacgacgct
cggcccggagttttggctagtggcgaagagatggatcacagagagaagaaggagaagaaa
gagaagaaggaaaaacgagagaagaaggagaagaccgagatggaccccgaaatcgcagag
gcgaatgcgatcagggccaagctcgggttgaagccgcttcgtggatga

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