Ostreococcus tauri: OT_ostta01g03900
Help
Entry
OT_ostta01g03900 CDS
T01358
Name
(RefSeq) Pre-mRNA-splicing factor 38
KO
K12849
pre-mRNA-splicing factor 38A
Organism
ota
Ostreococcus tauri
Pathway
ota03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OT_ostta01g03900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ota03041
]
OT_ostta01g03900
Spliceosome [BR:
ota03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
OT_ostta01g03900
Complex C
U4/U6.U5 tri-SnRNP related factors
OT_ostta01g03900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
HIND
CoV_nucleocap
Motif
Other DBs
NCBI-GeneID:
9836383
NCBI-ProteinID:
XP_022838269
OrcAE:
OT_ostta01g03900
LinkDB
All DBs
Position
1:619851..620973
Genome browser
AA seq
335 aa
AA seq
DB search
MANATDPLAKSVRGTDPQNLMERITRDKVYAMTYWKEKCFGVSAEALVDLAVDLRSVGGI
YGGNNRATEFLCLTLKLLQIQPEKEIVLEFIKNEDHKYVRLLGAFYLRLVGKPTDVYRYL
EPLLNDYRKVRYRTRDGKYALTHVDEFVNNLLTKDMFCDVTLPRVPHRQVLEAAGALEPR
VSALEEDIADLEEELESAVEEAIGQRMNMDVDAGEAAAAASTRGAREDGEIVASGSKRSR
EHDGVRYRECDDSDGDRYVRRRERSRSRSRDRVPARRDDARPGVLASGEEMDHREKKEKK
EKKEKREKKEKTEMDPEIAEANAIRAKLGLKPLRG
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgcgacggatccgctcgcgaagagcgtccgggggacggacccgcagaacctc
atggagcgaatcacgcgcgataaggtgtacgccatgacgtactggaaggagaagtgcttc
ggcgtgagcgccgaggcgttggtcgatctcgcggtcgacctcaggtcggtgggtgggatt
tacggcgggaacaacagagcgacggagtttttgtgcctcacgctgaagctgttgcagata
cagcctgagaaggagatcgtgttagagtttattaagaatgaggatcacaagtacgtcagg
ttgctcggcgcgttttacctacggttggtggggaaaccgacggacgtgtacagatacctc
gagccgctgttgaacgactatagaaaggttcggtatcgcacgcgtgatgggaagtacgca
ctgacgcatgtggatgagtttgtgaacaatttgttgacgaaggatatgttttgcgacgtg
acgctcccacgcgtgccgcatcgccaggtgttagaggccgcgggagcgcttgagccacgc
gtatctgcgcttgaggaggatatcgcagatttggaggaagagctcgagagcgcggtggag
gaggcaataggtcaacggatgaacatggatgtcgacgcaggcgaggccgctgccgcggcg
tccactcgaggtgcgcgcgaggacggcgagatcgttgcgtcgggatcgaagcgttcgcgc
gagcacgatggcgttcggtatcgagaatgtgacgatagcgacggtgacaggtacgtccga
aggcgcgagcggtcgagatctaggagtcgcgaccgcgtgccggcacgccgcgacgacgct
cggcccggagttttggctagtggcgaagagatggatcacagagagaagaaggagaagaaa
gagaagaaggaaaaacgagagaagaaggagaagaccgagatggaccccgaaatcgcagag
gcgaatgcgatcagggccaagctcgggttgaagccgcttcgtggatga
DBGET
integrated database retrieval system