KEGG   Ostreococcus tauri: OT_ostta03g00490
Entry
OT_ostta03g00490  CDS       T01358                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4/Small nuclear ribonucleoprotein Sm D1/D3
  KO
K11088  small nuclear ribonucleoprotein D3
Organism
ota  Ostreococcus tauri
Pathway
ota03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ota00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    OT_ostta03g00490
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ota03019]
    OT_ostta03g00490
   03041 Spliceosome [BR:ota03041]
    OT_ostta03g00490
   03032 DNA replication proteins [BR:ota03032]
    OT_ostta03g00490
Messenger RNA biogenesis [BR:ota03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     OT_ostta03g00490
Spliceosome [BR:ota03041]
 Complex A
  U1 snRNP components
   Sm proteins
    OT_ostta03g00490
  U2 snRNP components
    OT_ostta03g00490
 Complex B
  U1 snRNP components
    OT_ostta03g00490
  U4/U6.U5 tri-snRNP components
    OT_ostta03g00490
 Complex C
  U2 snRNP components
    OT_ostta03g00490
DNA replication proteins [BR:ota03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     OT_ostta03g00490
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 34945647
NCBI-ProteinID: XP_022838408
OrcAE: OT_ostta03g00490
UniProt: A0A096P7J4
LinkDB
Position
3:88251..88887
AA seq 107 aa
MSAGLGKGVGVPVKLLHESEGHVVTVELKTGETYRGQLVESEDNWNCQMTDVTHTGRDGK
ESRMEHVYIRGSKVRMMIIPDMLKHAPMFKRFDPKFDPKGGAGRGKK
NT seq 324 nt   +upstreamnt  +downstreamnt
atgagcgccggtctgggcaagggcgtcggggtcccggtgaagctcttacacgagagcgag
ggacacgtggtgacggtcgagctgaagactggtgagacgtatcgcgggcagctcgtggag
agcgaggataattggaactgtcagatgacggatgtcacgcacaccgggcgagacggcaag
gagagtaggatggagcacgtgtacattcgagggtcaaaggtgaggatgatgataattccg
gacatgttgaagcacgcgccgatgtttaagaggttcgatccgaagtttgatccgaagggc
ggcgcgggacgagggaagaagtag

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