KEGG   Ostreococcus tauri: OT_ostta03g01670
Entry
OT_ostta03g01670  CDS       T01358                                 
Name
(RefSeq) WD40/YVTN repeat-like-containing domain
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
ota  Ostreococcus tauri
Pathway
ota03040  Spliceosome
ota04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ota00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    OT_ostta03g01670
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    OT_ostta03g01670
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ota03041]
    OT_ostta03g01670
   04121 Ubiquitin system [BR:ota04121]
    OT_ostta03g01670
   03400 DNA repair and recombination proteins [BR:ota03400]
    OT_ostta03g01670
Enzymes [BR:ota01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     OT_ostta03g01670
Spliceosome [BR:ota03041]
 Complex B
  Other components
   Prp19 complex
    OT_ostta03g01670
 Complex C
   Prp19-CDC5 complex
    OT_ostta03g01670
Ubiquitin system [BR:ota04121]
 Ubiquitin ligases (E3)
  U-box type E3
   OT_ostta03g01670
DNA repair and recombination proteins [BR:ota03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    OT_ostta03g01670
SSDB
Motif
Pfam: WD40_Prp19 Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 EIF3I WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_WDR75_1st Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_NWD2_C Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_IFT140_1st U-box Ge1_WD40 B-prop_COPA_B_2nd
Other DBs
NCBI-GeneID: 9833000
NCBI-ProteinID: XP_003078075
OrcAE: OT_ostta03g01670
UniProt: Q01CY8
LinkDB
Position
3:280127..281659
AA seq 477 aa
MLCAISGAAPVRAVVTRRGIVYERSLIEKVIEERGECPVTKEPLRVDDLIEIKPQAWVNP
RPEAMMSVPGMLRAFHDEWDALMLETHSLRKELQMTRQELSHALYQHDAACRVIARLMKE
RDEARDALANAKGSAKRSAEDDAEPAPKKVKSGVPADIMEKMDACLKELSSARKKREISS
TLAASGDFDGYTATVTSAVHKTTSGGINAVAIKKGDDYIIASASNDHTVSVFDKSSSQRV
QQLVGHSKKVLDVKFVGDNVLSCGADKLVKLWGADGSELATFRDHTDDVTSVSVHPSNSY
FVSTSTDKTWGFHDIGSGSCVTLVNDDSDSAIACGSFHPDGVILGTCTKDAAVKLWDAKE
GRKLLQLDGHTSPVEGLSFSENGYYLATAAKDGVKVWDLRKSKIVHEIQGAAHGVAFDHS
GSYIAKAGSNAEVYQVKGKWEKLAELKVAKTVKAVAFGEDARSIVVGSADHNLRVFA
NT seq 1434 nt   +upstreamnt  +downstreamnt
atgttgtgcgcgatcagcggcgcggcgccggtgcgcgcggtggtgacgcgacgtgggatc
gtgtacgaacgatcgttgatcgagaaggtgatcgaggagcgtggggagtgcccggtgacg
aaggaaccgctgcgcgtggatgatttgatcgagattaagccgcaggcatgggtgaacccg
agaccggaggcgatgatgtcggtgccggggatgttgcgggcgtttcacgacgagtgggac
gcgctcatgctggagacgcactcgttgagaaaggagctgcagatgacgaggcaggagctg
tcgcacgcgttgtatcaacatgatgcggcgtgccgagtgattgcgcgattgatgaaggag
agggatgaggcgcgagacgcgctggcgaatgcgaagggatcggccaagcggagcgcggag
gacgacgccgagccggcgccgaaaaaggtgaaatctggagtcccggcggatattatggag
aagatggacgcgtgtttgaaggagctctctagcgcgcgcaagaagcgcgaaatttcgagt
acgttggccgcatcgggagactttgacggctacaccgccacggtgacctcagccgtgcac
aagacgacgagcggcggcatcaacgcggtggctataaagaagggtgacgattacatcatt
gcttctgcgagcaacgatcacacggtgtctgttttcgacaagtcaagctctcagcgagtg
caacaactcgtcggacactcgaagaaggtgctcgacgtcaagttcgtcggcgacaacgtg
ctgtcctgcggcgcagacaagcttgtcaagctttggggagccgatggttccgagctcgcg
acgtttcgcgatcacacggatgatgttacgagcgttagtgtacacccttcgaacagttac
ttcgtctccacgtccacggacaagacctgggggttccatgacattggctcggggtcatgc
gtcaccttggtgaacgacgactcggactctgccatcgcgtgcggaagcttccatccggac
ggcgtaattttaggaacatgtacgaaagatgcagcagtgaagctctgggacgcgaaggaa
ggccgcaaacttctgcaattggacggtcacacaagcccggtcgaaggattgtcgttctcg
gaaaatggctattatctcgccactgcagcaaaggatggggtgaaggtttgggatcttcga
aagtctaagatcgtgcatgagatccagggtgcggcacacggcgtcgctttcgatcacagc
ggctcgtatatcgcaaaggctggatccaacgcggaagtttaccaagtcaagggcaagtgg
gagaagctcgccgagttgaaggttgccaagaccgtcaaagccgtcgccttcggcgaagac
gcgcgttccatcgtcgtcggtagcgccgatcataacttgcgcgtcttcgcgtag

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