Ostreococcus tauri: OT_ostta03g03970
Help
Entry
OT_ostta03g03970 CDS
T01358
Name
(RefSeq) WD40 repeat
KO
K13133
gem associated protein 5
Organism
ota
Ostreococcus tauri
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ota03019
]
OT_ostta03g03970
03041 Spliceosome [BR:
ota03041
]
OT_ostta03g03970
Messenger RNA biogenesis [BR:
ota03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
OT_ostta03g03970
mRNA cycle factors
P-body specific factors
OT_ostta03g03970
Spliceosome [BR:
ota03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
OT_ostta03g03970
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_IFT122_1st
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_CDC20-Fz
TPR_GEMI5
Beta-prop_RIG_2nd
Beta-prop_WDR5
WD40_Prp19
Beta-prop_EML_2
WD40
Beta-prop_WDR36-Utp21_1st
WD40_WDHD1_1st
WDR55
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR3_2nd
PQQ_2
Beta-prop_TEP1_2nd
DSE1_N
WD40_Gbeta
WDR90_beta-prop_4th
Beta-prop_VPS8
EIF3I
Beta-prop_DCAF12
Beta-prop_Aladin
Beta-prop_SCAP
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
Beta-prop_IP5PC_F
Beta-prop_WDR75_2nd
Beta-prop_WDR75_1st
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
9832916
NCBI-ProteinID:
XP_003078301
OrcAE:
OT_ostta03g03970
UniProt:
Q01CB2
LinkDB
All DBs
Position
3:<653031..>656171
Genome browser
AA seq
1046 aa
AA seq
DB search
MRGIPPSPSWYSAHLACATSRGDIFAYASDKAIVAIEGERGRVIWRRNGKARANALCEAL
GECEESGAQKRVFACGCADKTIRVFDVEDGSARGGGLSGGHRHEVSAISAHGIGRIASGC
RDGTVAVWRISSDGSGSLESSHRGMDGPITAMASTGDVIAVGGANGTVCALDPSTGSTHR
VATSGYGEVTSLSWTRTRTSDGQTKELLAVGSRERRVTIWALDEGKLVNSHALLLPKPTT
ALSEAQRGRVWVAVAWTDASDETFAELVTSGQGGDLLLWRVPLTFGDGIEEVKQAKTFGP
RDAAHTRTVFTVTTADDKCWSTSLDRKVACWDLETIEMRWSYTALGGYVYDLTTAADDPF
SVAIACGDGTVHAWDLSPTLSCDMGESVLWKGIPNTKVTSVARKPKSDVVAFGLDDGRVG
CFDSTSGKFACYPECHGASVHQLKWLEIRTEGEEQGVFSLTSLGADGSLRRWLETFEPST
CDTKKSGIADARKYGKYLDLAQLCQGVGSSENKYIETFDQSPVVGRLACGWSTGELSGHD
FGEVLWQHREHSKSVSRVRWHPESDDASSQYSSWLASSSTSGSILIHGIGGSVLCALPRA
SVHDIAWSPRANVAILACALHGSVKIWSVDKVAHDFNLSNLAVLHGHVGKVMCVKFAYHD
DNIVLSGGDDKTFRIWNYTDTDHAPRDAETSAIKLGASFTDDIVVEQPSKAPSAKKSSSS
VKSKAPKSTGISGPLLKPPQGENTPEGIEVGRAAVLALARRVFKGEATDEVASDTLTYGP
SGTALYEDTDAAMALLSNEAESASRNANSFKDVERAVALHIYQGDYARAALTLLKASDSP
LPSEFMSIFVGGGYEVWSTVAAAQCERLAAAGEFQQAAMLRLSLHDVRGAIRTLRQGGMI
RDAAALAAARLLPTDELLLETRHELAAAEETRGGMEAAAKTHISLGNAAAAVRALMRPEV
GGALAAAKLALMCNLTGPQERRTVVRAAIELAEKDNYTDAMDLLSELSDILRRDGHDVDV
TAAVIGTANAPEVAAELARRLAVASI
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggtattccgccgtcgccgtcgtggtacagcgcgcacctggcgtgcgcgacgtcc
aggggagatatctttgcgtacgcgtcggataaggcgatcgtggcgatcgagggcgagcgt
gggagggtgatttggagacggaatggaaaagcgcgagcgaacgcgctgtgcgaagcgctc
ggcgagtgcgaggagagcggggcgcagaagcgtgtgttcgcgtgcggatgcgcggataag
acgattcgggtgttcgatgttgaggacgggagcgcgcgaggtggggggctctcgggggga
catcgacacgaggtgagcgcgattagcgcgcacggcatcgggcgcatcgcgagcgggtgt
cgggacggaacggttgcggtgtggcggatctcgagtgatggctcgggatcgctcgagagc
tcgcataggggtatggatggccctatcaccgctatggcgtccacgggggacgtcatcgcc
gtcggtggggcgaacgggacggtttgcgcgctggatccgagcacgggttcgacacatcgc
gtcgccacgagcggctatggcgaagttacgtccctgtcgtggactcgcacgagaacttcg
gacggtcagacgaaagaactcctagctgtcggaagccgagagcgacgagtaacgatctgg
gcgctggatgagggtaaactagtgaactcgcacgcgcttctcctgccaaagccgacaacg
gcgctgagcgaggcacagcgcggtcgcgtttgggtcgctgtggcgtggacagacgcgagc
gacgaaacgttcgctgagttagtgacttcgggacagggtggagatttgcttctatggagg
gtgccgttgacctttggcgatggaattgaagaggtgaaacaggcaaagacgttcggaccg
cgagatgcggcgcacacccgcacggtgttcacggtgaccaccgcggacgacaagtgttgg
agcactagcttagatcgaaaggtcgcgtgttgggatctggagacaattgaaatgaggtgg
tcatataccgctctgggtggatacgtgtacgatttgacgacggctgcagacgatccgttt
tccgtggcaattgcatgcggcgacggaacggtgcacgcatgggatctttcgcccacattg
tcttgtgacatgggagagtcggtgttgtggaaaggcattccaaatacgaaggtgacgtcc
gtcgcgcgcaaaccaaagagcgacgttgtcgcgttcggactcgacgacgggcgagtgggc
tgcttcgattcaaccagcggaaaattcgcgtgttaccccgaatgtcacggtgcgtccgtc
catcagctgaaatggcttgagatacgcaccgagggtgaagagcagggagtgttttcgctc
acgagcctcggcgcagacggttcattaagacgttggttggagacgtttgagccctcgacg
tgcgacacgaaaaagtctggcatcgcagacgcgcgtaagtacggcaaatacttggattta
gcgcagctatgccaaggagtgggttcgagcgaaaataagtacatcgaaacgttcgatcaa
tcacccgttgtcgggcgtttggcgtgcggatggtccaccggcgagttgagcggtcacgat
ttcggtgaagttctttggcaacatcgcgagcacagtaagtctgtgtctcgcgtgcgatgg
catccagagtccgacgatgcatcgagccaatattcatcgtggctcgcttcgtcttcgacc
agcggcagcatcctgattcacggtatcggtggttccgtcctttgcgcgcttccgcgggca
tcagtgcatgacattgcctggtcacctcgcgctaacgttgcgattttggcgtgcgcgctt
catggaagtgtcaagatatggagcgtcgataaggtggcgcacgattttaatctcagcaac
ttggctgttctgcacggacacgtcggaaaagtgatgtgtgtgaaatttgcgtatcacgat
gacaacattgtcttgagcggcggcgatgataagacatttcgcatttggaattatactgac
acggatcacgcgccgcgcgatgccgaaacgtctgcgattaagttgggtgcttcttttacg
gacgacattgtcgttgagcaacccagcaaggcgccgagtgcgaagaaatcgtcttcctcg
gtgaagagcaaagcgcccaaatcgactggaattagtggtccgctgttgaaacctccacag
ggagagaacacgccggagggcatagaagtaggacgtgcagccgtgctcgcgctcgcacga
cgtgtttttaagggcgaggccaccgatgaagtcgcctcagatacgctcacgtatggtcca
agcgggacagcgctgtacgaagataccgacgcagcaatggcgctcctgtcaaacgaggct
gaatcggcctcccgaaacgcgaactcgttcaaagacgtcgaacgcgcggtagctttgcac
atatatcaaggggattacgcccgagctgctctgacgctgttgaaagcgagcgattcgccg
ctgccgagtgaattcatgtcgattttcgttggcggcggttacgaggtatggtcgacagtc
gccgcagcgcagtgcgaaagactcgctgctgcgggagagttccagcaagctgcaatgtta
cggttgtcattgcacgacgttcgaggagcgatacgaactctcagacagggcgggatgatt
cgtgacgccgcggcgctcgctgctgccagactcctaccaacagatgaacttctgctcgag
acgagacacgagctcgccgccgccgaagaaacgcgcggaggcatggaggcagcggcgaag
acacatatttccctcggcaatgcggccgccgccgtgcgcgctctgatgagacctgaggtc
ggcggagcactcgccgccgccaaactcgccctcatgtgcaacctcactggtccgcaggag
agacgcactgtggttcgcgctgcgatcgagctcgccgagaaagacaactacaccgatgcc
atggaccttctcagcgagctctccgatatcttacgacgcgatggacatgacgtggacgtc
accgcggctgtcatcggcaccgccaacgcgcctgaagtcgccgccgagctcgctcgacgc
ctcgccgtcgcatccatctag
DBGET
integrated database retrieval system
