Ostreococcus tauri: OT_ostta03g05560
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Entry
OT_ostta03g05560 CDS
T01358
Name
(RefSeq) Vacuolar protein sorting-associated protein 13A N-terminal domain
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
ota
Ostreococcus tauri
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ota04131
]
OT_ostta03g05560
Membrane trafficking [BR:
ota04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
OT_ostta03g05560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_VAB
VPS13_N
VPS13_C
VPS13_M
Motif
Other DBs
NCBI-GeneID:
34945731
NCBI-ProteinID:
XP_022838646
OrcAE:
OT_ostta03g05560
UniProt:
A0A090LZK3
LinkDB
All DBs
Position
3:complement(919680..928736)
Genome browser
AA seq
3018 aa
AA seq
DB search
MIGLHTALAPLIARVLRHYVDGISKENVHASLLGRKLRLSDVTLRKDALDGLALPCNVVK
VRVRVLEIAFRPFARDSIVVKVDGVECELEQASEGDDDVDYDELLSRRDAREKIMEEIAR
DLASRVEAETSGGVSKAIAAAALERLSFESAAGSVTFRTRGSRRGVIQVGWRNVSIRSAS
MTTSTSTSTSSRADDEDGDGELSGVRASKRFKGVTKIMFSGDTRKRVELNGLSVIVNDGG
GSSGVVIGPDARLRMDAHLHKRPKRERYEHPNASVYVVKMDVKDKLEALVSASQVKMVQL
AMDDMEMWAKRRAHGERRPKTKNPVDWWRYAVRATVPRGKRHRARVLETMRRAKAHLKSY
IEIHAERSLGKEVAMPKHLQSFEAGLSKYDLVYITQLAEVEAAKRRKGGDSEMDSWLPSE
HTMYSASQIFGTSEDVRRPRTSTNTSTSSSNFSSYVYAKGTGYLSKAYGYMRFPSLSRSS
EVSHDEFKPEATIVIPGVSVTMCDQSMSNRVRFTARGISLNHGPLVNDVDGVLSETVLTV
DQVHGEDLSNDRVGKMIWARVVDGDDARPAVVVKLNPDSCPDLDVLMSTHVKLSPHAIVV
QPSTIRVLMSMMNALDTPFATAFKNSALALNSHSPQCRLGIIESLGSGLVASPTLIEVDS
PLIIISSKPVSRFKTENDISGALAFGVEKFVLCTQNGLLSREDVFDKLVEESSTSDFENV
NALALRTRTFARVDGAWASASNAPMPIVSDVKMTLVNDITLFDSDTTMVNLGPLELEFTP
ESMAALLHAVAVFSDVAPSSSSSSTTPAPVDSAVKFEVPKIKVSLKSGDDRLEYVISDVN
VAMKGSSNDWRMKSTIGQLSGEHVSGFERTALLKCSSPFMKANVCSRVAGIIEVGTIEAR
CTRQMLNMLSDMAFQTKGIRTIEGDLVLCPRMHECCPIQSEFEKAWSSVETFDIPDTGAG
FLRGTIEPMCFKLFEESDETDALILTTHAMEICGNVTHVELELHRMLLSILNVRSQMLLF
DVEEVRAQHSVGTKETTSVRIGSIALEVTPESTRRLVAIMQTVPQIPSLSIDSPKSNTNA
GIISSLPNLDLSVKSVKLSAKDEDEVAVIFSDVATRIDAHDKAVKIELNIDSAGVDVTTR
SNRDRPFSVIKLNDKTHDALKVVAEGISRTEMREEIKVEVHIGDGVVEFNAPYIIAAVNV
CTSISRSLPEQNSSPMGTTSRVDVERSPSITAELSTGMWTFQLPWRSELERHAPLRMIRL
RTRQAVGLHEFVLGSTIQATFFLQEFKLETGYCKDEQDQEDSSVMFTLAEVTGLETQINV
PATSSSYCTSEVVPKFEVTAESVSAHANEISLHLLIEIAELVMAQPATAQAIEAYDALPQ
SASSKIFEASLRVDVITACLEYSQVHRSVPIVQAMMTNMRAEMRSSNLGADINVNVHAEV
DYLHPVKAAWEPIIESTPFLVSTKMTTEFQPTSVTVSVASGLDVTVSPSVVEALLKAQVV
VESAQTAIADLEHSTSFGPCSYQMTNVTGFDVDYGLSYVRDGAITHAGEGTTVAGDTQLM
RFAKREEKYRVDQHRVFECGASYWASPIDDDDVDGGHGQDTAQEPVPHVSVEFKTVDVDA
EPISLHGGMDEERRLLEYAAHLEDGSSTRIIAEIGPCSTRVNRYELLLRSDVSILNGTSF
PIVMCFQHSVALPSTIFGPIFPGESAWLPIPLCKYRKVQWRAMSLDEDFEDFGDISAVDA
DVGDSLGGSPFLSPLQRGKKSATSQSPRLCGGSSGPRHQHHWSTAFTFNDLITNDGAIAA
SLCSTASAQEVESSKPYTCALVVTRSEEFKRVQLALCSPLRIVNALPLQLVVTCCSKNAF
KHDMITESRVVSPGESVLFTTLHPTWSATVTAQIIGYETCEDLIVPEYTQALKTAKRRSN
GEIYHIDRDAKPVDRKGSQDSFAAVSLRFAFSIDDVTQVRTLHCAAPLIILNATSCAIVL
EDMLHGIKAEDSTLLREAESNEMIPQTQQGKLTSTPLRLFEEDAENFETPPPVSPFARLA
QNQALPQLSSSRSSTVFTDASPVLLRQSSLRLNAESINFVTPTTPGQHSTPSVVQRSEFY
DKGDNGVATRVSILGSSAHWRKKITHRPRVRIRLKASRFWSRPFRISPDGVPIEISVPSE
SSADVCEHRFIATSSVATTEKMYDTAKLDIRPKFLIKSTLDEAIWIRHGGTEHVELLPAR
TTRPLKWFDWRGKKSKIVMFRPEKGVFEWSKPVIVPDHVASILKMHHIGVNSSMHTETIT
VSILENDDSSFTIRIARPTEIDGILGMHTIENHSNVEIWYHQLGTSGDQLRLGPKESDER
MIEDSSLPRALVIGYGELPLGEPISLDVSREISYSVVTTDRNCLRITVTREGPMCSVIIE
DALGTRVSTTPERPILRPKSVERDNPQVDFSLKCNWIGMSMLHGHEELMYARMSDVAVKT
ITDGSEFKSALRVKHIRVDHTSTRAKRPIVLDIPERHQSAREAMELQVHGWMHRMNGLPV
VRSLKIDLAPAFIDIHDELIDVIPLAIEPCMRHAELLLPPAKPNKGKSKGSNKRQQEGET
MSALTSVYLQELIINDVELILSFSRLPGLPIAIRSLAGVDRARLRMKGFHMNQPSLMAAD
VGAMAARHFSREAVVLASSLWAHNSLLGDPKRLWEEIFEAFNEFHSGSTVTALPRVVMAL
TAAFAHSGEVALSQARDVVEGWLEALEASQSKRRFALQTRRLGAVEDSQKKVSETLLQHA
FDTVARVIFDVIDGPLSGMEIGGVWGMMEGSAIGALSAFTRVLATILDASELSARRLRLF
AAIKTFDESEYMRPRRPLPTSYMDPVRPYHYIEAIGRMTLAKLETSERDEKFVAAATMSW
PSYDFCILTGGKLLIISRPRDAGAIPYVRSSVRFVDITGVLRDSHRVSINAVTAVESMQS
QPVTMQSALDRAYSFALSALGRFRTSASTYSTPNDEASRAYEDTTPRTVVVRCADEDAAH
WLTSALSPFVHANSARRQ
NT seq
9057 nt
NT seq
+upstream
nt +downstream
nt
atgatcggtctccacaccgcgctcgcgcccttgatcgcgcgcgtgttgcggcactacgtc
gacggaatatccaaggagaatgtccacgcgagtttgctcggacgaaaacttcgcctgagc
gacgtgacgctgcgcaaagacgcgctcgatggactcgcgttgccgtgtaacgtggtcaag
gtgcgggtgcgggtgttggagatcgcgtttaggccgttcgcgagagattcgatcgtcgtc
aaggtggacggcgtcgagtgcgagctcgaacaggcgagcgaaggggacgacgacgtggat
tacgatgagctcttgagcaggagagacgcgagggaaaagattatggaggaaatagcgagg
gatttagcgtccagggtggaggccgagacgagcgggggggtgtcgaaagcgatagcggcg
gcggcgctcgagcggttatctttcgagagcgccgccgggagtgtgacgtttagaaccaga
ggttcgcgtcgaggggtcattcaggtgggttggaggaacgtttcgattcgaagtgcgtcg
atgacgacgtcgacgtcgacgtcgacgtcgagcagagccgatgatgaggacggcgatgga
gaattgagcggcgttcgcgcctcaaagcgattcaagggagtgactaagatcatgttcagc
ggcgacacacggaagagggtggaattgaatgggttgtcggtaatcgtgaatgacggtggc
gggtcctcgggagtcgttatcgggccggatgctcgacttaggatggatgcgcacttgcac
aagagaccgaagagagagcgatatgagcatcccaatgcgtcggtgtatgtcgtgaagatg
gacgttaaggataaattagaggcacttgttagcgcgtctcaggtgaagatggtgcaactt
gcgatggacgacatggaaatgtgggcgaagaggagggctcacggcgagcggaggccgaag
accaaaaatccagttgattggtggagatacgcagtcagagctacggtaccgcgcggaaag
cgacatagagctcgagtcttggaaacgatgcggcgcgcgaaggcacatctaaaatcctac
atcgaaatacacgccgagcgttcgctcggaaaggaggtggcgatgccgaaacatctacaa
agttttgaggctgggctcagcaaatacgatcttgtttatatcacccaactcgccgaagtt
gaagcggcgaaacggaggaaaggaggagactcagagatggatagttggcttccgtcagag
cacaccatgtacagtgcgtcgcaaatttttggcacgagtgaagatgtccggcgtcctcgc
acgtccaccaacacgtcgacatcttcatcgaatttctcgagttatgtgtacgcgaaaggt
acgggttatctgtccaaagcgtatggctacatgagatttcctagtctcagccgctctagc
gaggtgtcccatgatgaattcaaacctgaagcaacgattgtaattcctggtgtttccgtg
acaatgtgcgatcaatcaatgtcgaatagagtcaggttcaccgcacgtggaatttcgttg
aatcacggtccgctagtgaatgacgtcgacggcgttttgagtgaaaccgtactcaccgtg
gaccaggttcacggcgaggatttgagcaacgaccgcgtggggaaaatgatatgggcacgt
gtcgtcgacggcgacgacgcgcgcccagcagttgtggtcaagttgaacccagactcgtgc
ccagatctcgacgtcctcatgagtactcacgtcaaactttcaccacacgccatcgtggtt
cagccgagtactattcgagtattgatgtccatgatgaatgcgcttgatacacctttcgcc
acggccttcaaaaattccgcacttgcgcttaacagccactcaccacagtgtagattggga
atcattgaatcactcggatcagggttagtagcaagtccgactctgatcgaggttgactct
ccgttgattattatttcgtcgaaacctgtcagtcgcttcaagacagagaatgacatctct
ggagccttggccttcggagtcgagaagtttgtgttgtgcacgcaaaacggtttgctgtcg
cgtgaagacgtttttgataagctagtggaggagagttcgacctccgatttcgaaaacgtg
aatgcgctcgctctgcgcactcgcactttcgcgcgcgtagacggcgcttgggcgagcgcg
tccaacgccccaatgccgattgtgtcagacgtgaaaatgacgctagtgaacgacatcacc
ttgttcgattctgatacgacaatggttaacctcggccctttagagctcgagttcactcca
gagagcatggctgctttgttgcacgccgttgcggttttttcagacgtcgcgccttcgtca
tcatcctcatcgacgacaccggcgcccgtcgattccgcagtcaagttcgaggtaccaaag
atcaaggtgagtctcaagagcggagacgaccgtctggaatacgtcatctcagatgttaac
gtagcgatgaaaggttcgtcgaatgattggagaatgaagtcgacgattggtcagctttct
ggtgagcacgtatcaggctttgagagaacagcgcttttaaagtgctcgtcgccattcatg
aaggcaaatgtgtgctcacgagtcgccggaatcattgaagttggtacgattgaggcgcga
tgcacgaggcagatgttgaacatgctctccgatatggctttccaaacgaaaggaattcgc
acaatcgagggcgacttggttctatgtcctcgtatgcatgaatgctgtccaattcaaagt
gagtttgaaaaggcatggagttcggttgagacattcgatattcccgacactggagcgggt
ttcttacgcggtacgatagaaccgatgtgcttcaaactcttcgaggagtccgatgaaaca
gatgctctcattctgacgacgcacgctatggaaatttgtggcaacgtgacgcacgtcgag
ctcgagcttcatagaatgctcctctctattctaaacgtgcgctcacaaatgctattgttt
gatgtcgaagaagtacgcgcgcagcattcagttggcacgaaagagaccacgagtgtgcgt
attggatcgatcgcacttgaagtgacgcctgagagcacacgaagattggtcgcaatcatg
cagactgttcctcagataccgtcgttgtcgatcgattcaccgaaatccaatactaacgcg
ggcatcatttcttctcttcctaacttggatttgagcgttaagagtgtcaagctgagcgct
aaggacgaggatgaagtggctgttatattctctgatgtggccacgcgtatcgatgcacac
gacaaagcagtgaaaatagagttgaatatcgactccgcaggcgtcgatgtaacgacgcga
agcaatcgagatcgaccgtttagcgtgatcaagttgaacgacaagacgcacgacgccttg
aaagtagtcgctgaaggcatttctcgtacagagatgcgagaagaaatcaaggtggaagta
catatcggcgatggagttgttgaattcaacgccccgtacattattgctgccgttaacgtt
tgtaccagcatctctcgatcgcttccagaacagaattcgtcaccgatgggcacaacttcg
agggtcgatgtagaacgcagtccatcgataactgccgagttgagcactggcatgtggacc
ttccaactgccatggcgatcggagcttgaaagacacgcgccactgcgcatgatacgactg
agaacgagacaagcggttggattgcatgaatttgtacttggctcgacaattcaggcgacg
tttttccttcaagagttcaagctcgagacgggatactgcaaagatgaacaggaccaagag
gactcttccgtaatgttcacgctcgcggaggtcaccggattggaaactcagattaatgtg
cctgcgacgtcctcatcgtattgcacaagcgaggttgttccaaaatttgaagtcactgct
gagagcgtgagtgctcacgcgaatgaaatctcgctgcatcttctcatagaaattgcagag
ctggtcatggcccagcccgccacggcgcaggcgattgaagcgtatgacgcactgcctcag
agcgcttcttcgaaaattttcgaggcttccttacgcgtcgatgtcatcactgcgtgtctt
gaatactctcaagtgcatcgcagcgtgccaatcgtgcaagctatgatgaccaacatgcga
gcagagatgaggagctctaacttgggagcggatatcaatgtcaacgttcacgcggaggtt
gattatctacatccagtaaaagcagcgtgggagccaatcatcgaatcgacgccgtttctc
gtctcaactaaaatgaccactgagtttcagccgacttcggtcactgtgtcagtcgcttct
gggttggatgtgactgtttcaccaagtgttgtcgaagccctgcttaaggcgcaagttgtc
gtagaatcagcgcagacagcaatagcagatcttgagcactctacctcttttggaccatgc
tcgtatcagatgacgaacgtcacgggttttgacgtcgattacgggttgtcttacgttcgt
gatggtgcgatcacgcatgccggagagggtacaactgtcgccggcgacactcaactgatg
cgctttgcaaaacgcgaggagaagtatcgggttgatcaacacagagtcttcgaatgtggt
gcatcttattgggcgtcccccatcgatgacgacgatgttgatggtggacatggacaagac
actgcgcaggaacccgtaccccacgtgtctgtggaattcaaaacagtggacgtcgatgct
gaaccgatttccctccatggaggaatggatgaggagcgcaggttattagaatatgcagct
catctcgaggacggttcgagcacacggatcatcgccgagatcggcccatgttcaaccaga
gtgaaccgttacgaattgcttctccgatctgacgtctcgatcttgaatggtacgagcttt
ccaatcgtgatgtgctttcagcacagtgtcgctctcccgtcgacgatttttggaccgatt
ttcccgggcgagagtgcctggcttcccatacctttgtgcaaatatcgcaaagtgcagtgg
cgtgcgatgtcacttgacgaggattttgaggattttggcgacatttctgctgtggatgcc
gacgtgggcgattcattaggtggatcgccatttctcagtcctttgcaacgcgggaagaaa
tcagctaccagtcagtcgccgcgactctgtggcggcagttcgggaccacggcatcaacat
cactggagcaccgcattcaccttcaatgatctcataaccaacgatggtgcgatagctgcg
tcgctatgctcaacagctagtgcgcaagaggttgaatcttccaagccgtacacgtgcgca
ctcgtcgtgactcgcagcgaagagttcaaacgggtgcaactcgctttgtgctcaccactg
aggatcgtcaacgcgctgccgctacagctcgtcgtaacgtgctgttcgaagaatgccttt
aagcacgatatgataactgaatcccgcgtggtgagtccaggtgagtccgtccttttcacc
actcttcatccaacttggtcggcgacggtgacagcgcaaatcatcggctacgagacgtgt
gaggatctaatcgtgcctgagtacacgcaggctctgaagactgccaaacgacgctcaaac
ggtgaaatatatcacattgaccgcgacgcgaagccagtggatcgcaaaggaagtcaggat
tctttcgcagcggtttcacttcggtttgcattttcaatagacgacgtgacgcaagtacga
accttgcactgcgccgcgccattgattatcctcaatgcgacatcatgtgcgatcgtgctc
gaagacatgctgcacgggattaaagcggaagattctacactactgcgtgaagccgaatcg
aatgagatgatccctcagacgcagcaaggcaagctaacgagcacgccactgcgtcttttc
gaggaagacgcagagaattttgagacgccgccaccggtgtcaccgttcgctcgactggct
caaaatcaggcgttaccgcagctttcaagctcacgttcctcaactgtgttcacggacgcg
agtccagtgttactgaggcaatcttcgttgcgtttgaatgctgaatcaataaatttcgtc
actccaacgacacctggacagcattcaacgccatctgtcgtgcaaaggtcagaattctac
gacaaaggtgacaatggcgtcgcgacgcgagtgagtattctagggagctctgcgcactgg
cgaaaaaaaatcactcatcgtccacgtgtgcgcattcgtctcaaggcatcccggttttgg
agtaggccgttcaggatcagccccgacggcgttcccattgagatatcagttccttctgag
agcagcgctgacgtgtgtgagcatcgtttcatcgctacatctagcgtcgctacaacggag
aaaatgtatgacactgcaaaactcgatattcgaccaaagtttctcatcaaaagtacgctt
gacgaagcgatttggatacgacacggtggcaccgagcatgtcgagctactgcctgctcga
acgactaggcctctgaaatggttcgattggagagggaaaaagtcaaaaattgtcatgttt
cgaccggaaaagggggtgttcgagtggtctaagcctgtgattgttccggatcacgtggcg
tccattctgaagatgcatcacatcggcgtaaatagcagcatgcacacggaaaccatcacc
gtctccattctcgagaacgacgacagttccttcacgatacgcatagcgcggccgactgag
atcgacggtatccttggcatgcacacgattgagaatcactcaaacgttgagatttggtat
catcagctcggcacaagtggtgatcagttgcgcctgggtccgaaagagagcgacgaacgt
atgatagaggattcgtctctaccgcgtgccctggtcattggttacggtgaactcccttta
ggagagccaatatctctggatgtctcgcgcgagatatcgtacagcgtcgtgaccacggat
cgaaactgtttgcgaatcacggtgacgagagagggtccgatgtgttccgtaataattgag
gatgcgctcggcacacgtgtgtctacaacacccgagcgtccaatcttgcgaccgaaatct
gtcgaacgcgacaacccgcaggttgatttttcgctgaaatgcaattggattggcatgagt
atgcttcacggtcacgaagagctcatgtacgcacggatgagcgatgtggccgtgaagacc
atcacagatggctcagagttcaagagcgctcttcgtgttaagcacattcgagtggatcat
acgagcacgcgagcaaaacggcccattgtcttggatataccggagcgacatcagagtgct
cgcgaggccatggaacttcaagttcacggttggatgcatagaatgaacggcttaccagtt
gtgcgttcattgaagattgatttggctccggcgttcattgacatacacgatgaactcatc
gacgtaataccattggcgatcgaaccgtgcatgaggcatgccgaacttcttctaccgcca
gcgaaaccgaacaaggggaagagcaagggatcgaacaagcgtcaacaagaaggtgaaacc
atgagcgcactcacatcggtttacctgcaggaactaatcatcaatgatgtggaactcatc
ttgtcgttttcccgattaccggggctacccatcgccattcgctctctcgctggggtcgac
cgagcgcgccttcgcatgaaaggttttcatatgaaccaaccttcgctaatggcggcagat
gttggcgcaatggccgcgaggcatttcagcagagaggctgtcgtccttgcgagctccttg
tgggcgcacaattctttgctcggtgatccaaaacgattgtgggaagaaatatttgaggcg
ttcaatgagttccatagcgggtcaacagtcacagcgttgccgcgagttgtcatggcactc
acagcggcattcgcgcactccggagaagtggccttatcacaagcgagagatgtcgtcgag
ggttggctcgaagctttggaagcttcgcagagcaagcggcgcttcgctcttcaaactcgg
agactcggtgcggtggaggactcgcagaagaaagtcagtgaaactttacttcaacacgcg
tttgataccgtcgcgcgagttatttttgacgttatcgacggacctttatccggtatggag
ataggtggcgtgtggggcatgatggaaggttcagcaataggcgcactgagcgcgttcact
cgcgtgttggcgacgattttagacgcctctgagttgagcgcgcgaaggcttcgattgttt
gctgcgattaaaacgttcgatgagagcgaatacatgcggccgagacgtccgctaccgacg
tcttacatggaccctgttcgtccttaccattacatcgaagcaatcgggcggatgacgctt
gcgaaactagagacgagcgaacgtgatgaaaaattcgtcgccgcggcaaccatgtcgtgg
ccgtcgtacgacttctgcatcttgaccggaggtaaactcctcattattagtcgaccacgc
gatgcgggagcgataccatacgttcggtcgagcgtgagatttgtggacatcacaggcgtc
cttcgtgatagccatcgcgtatcgatcaacgccgtgactgccgttgaatcgatgcaatct
cagccggtgacgatgcaaagcgcactcgatcgcgcgtacagcttcgcgctctcggcgctc
ggtcgttttagaacgagcgcgtcgacgtattcgactccgaacgacgaggcatcgcgcgct
tacgaggacacgacgccaaggacggtcgtagtgcgatgcgccgacgaggacgctgcacat
tggctcaccagcgcgctctcgcccttcgtccacgccaactccgcgcgacgccagtag
DBGET
integrated database retrieval system
