Ostreococcus tauri: OT_ostta04g01650
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Entry
OT_ostta04g01650 CDS
T01358
Name
(RefSeq) Up-frameshift suppressor 2
KO
K14327
regulator of nonsense transcripts 2
Organism
ota
Ostreococcus tauri
Pathway
ota03013
Nucleocytoplasmic transport
ota03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
OT_ostta04g01650
03015 mRNA surveillance pathway
OT_ostta04g01650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ota03019
]
OT_ostta04g01650
Messenger RNA biogenesis [BR:
ota03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
OT_ostta04g01650
mRNA cycle factors
P-body specific factors
OT_ostta04g01650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
YL1
Motif
Other DBs
NCBI-GeneID:
9833878
NCBI-ProteinID:
XP_022838732
OrcAE:
OT_ostta04g01650
LinkDB
All DBs
Position
4:280552..283655
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AA seq
1033 aa
AA seq
DB search
AAAELEARRREWERSREVRARARVGNASPSRPDEQGLKSRDSSIKKNTTLIKKLRTITEE
NARALLTELSKTNVSKYVSEAALACVEGKMKSSDVNAAVEIISCMHQTYADFAAPLEEAL
RAYVVPPRPETLLKMAEGEIEALPSALQRRIKLRLFLELHIVGVCPKVKPVLDVVKELAR
LEYKIAPDLYQHTLSTLSSFAKTFAVEMLGAEPEFETNDEDFVLPADVQQEFKSTLNEYC
DRLFLVLMEAFFAMTEQEREIARLLERTGAVSESASVEFAALTKVFDGLLKGATTLAETL
GRELPEMKKKVEERVAPVGTMELHRGGVRTSSERSDLWEDEEQRHFYETLPDLQASIPAV
LLASDTQEIESETERLKREKEDITEGRTAKLQGLILRLSDCMSKDKADSICTDFCYIGAR
GGRKRLIQEFLNVRRSEIDRIPFYGRMIATLGAVFDDIAPTVSKALKEDFDYLMKKGTRA
NLGERLKNIIFIGELVKFGMITDLSTVFEVIKLLVDDFHGDNVDVLCSLFDVAGYYLTRT
QTTSKRMGSILDIFLRLKAVSQLDARQCALVDSAYYKCRPVQTIIVRKTRPPMQEYIRDL
IFSQLSKRTLEKVATQLRKLPWDETEEYLVKKLLKVCKLRHSSVPAVAALIAKLSQFYPT
LAVRCLDAVLEDVRFGLEVNETWMHQRRVANMRLLACLYKERVSHFREILDTLYLIISIG
YDGREAKDYPGDTIRLRMVCTLLENALKGHGAMNHAQRKELDRFLIFFQRYALTKDVAVD
VANDVVEVLVALNPRMKICETYEEANAECKKLIEKPNTTPGGMETVLEEDEVEGLSESEE
PEDEDMEESADEEDEESSVSEPSVDSDMDVNDEHASGDGSEASEEEQEVKVRMKLKQASM
QEQRDFEREMNKFLGTPANPALGSATRNFSKASIYKPKNTSGGTIMFKMLVKNQGKQVTK
ELNVPEGAEFVASVKEVMKAEEAELAEVKRKVLNMGYRDDEDEGSNFVPRSRHNYGWREK
PNDRREFNASRWL
NT seq
3104 nt
NT seq
+upstream
nt +downstream
nt
aggcggcggcggagctcgaggcgagacggcgagagtgggagcgatcgcgcgaggtcaggg
cgagggcgagggtggggaacgcgtcgccgtcgaggccggacgagcaagggctgaaatcga
gggattcgagcattaagaagaatacgacgctgattaaaaagttgcggacgattacagagg
aaaacgcgcgggcgctgttgacggagctgagtaagacgaatgtgagcaagtacgtcagcg
aggcggctttggcgtgcgtggaggggaagatgaagagctcggacgtgaacgcggcggtgg
agatcatctcttgcatgcaccaaacgtacgccgactttgccgcgccgctcgaagaggcgc
tgcgcgcgtacgtggtcccaccgaggcccgagacgctgttgaagatggccgagggtgaga
tcgaagcgctaccctcggcgttgcaacgccggatcaagctgcgtctgtttctcgaacttc
acattgtcggcgtgtgtcccaaagtgaagcccgtgctcgatgtggtgaaggaattggcgc
gtctcgaatacaaaatcgcgcctgatctgtatcaacacaccctgagcacgctctcaagct
tcgcgaaaactttcgcggtagagatgctcggcgccgagccagagtttgagacgaacgacg
aagatttcgttcttccagcggatgttcagcaggagttcaagtcgacgctcaacgagtact
gcgacagactcttcctcgtgctcatggaggcattttttgccatgacggagcaagagcgcg
agatagcacgattgctagaacgtaccggagcggtgagcgaatctgcatctgtggagttcg
cggcgctcacgaaggtttttgacggattgttgaagggggcgacgactcttgccgagacgc
ttggacgagagcttccagagatgaaaaagaaggtcgaggagagggttgcacccgtgggaa
caatggaactacatcgaggtggcgtgcggacatcgagcgaacgaagtgatttgtgggaag
acgaggagcagcggcacttttatgagacacttccagatttacaagcctccataccggcgg
tgttattagctagcgatacgcaagagatcgagtccgagaccgagcgactcaagcgggaaa
aggaagacatcactgagggacgtactgcaaagttacagggattaatcttgcgactatccg
actgcatgtcaaaggacaaagctgattcaatttgcacagatttttgttacatcggagctc
gaggtggtaggaagcgtttgattcaagagttcctgaacgttcgacggtcggagatcgatc
gcattcccttttatggtagaatgatcgcaactctcggggccgtttttgatgacatcgctc
ccaccgtgtcaaaggctctcaaggaggattttgattatctcatgaagaagggtacgcgcg
caaatcttggcgagcggttgaagaacatcattttcatcggcgagctcgtcaagttcggga
tgataacggatttgagtacggttttcgaagtcattaaactactcgttgacgattttcacg
gagacaacgtcgatgttctgtgttctctgtttgatgtagccggttactacctcacgagaa
cacagacaacgtcaaagcgaatgggaagtattttggacatcttcttgcgactgaaagccg
tgagccaactcgatgcgcgtcagtgcgcactggttgacagcgcttattacaagtgcagac
cagttcagacgatcatcgtacgtaaaactcggccgccgatgcaagagtacatacgagatc
tcattttttctcaactgtcaaagcggacgttagagaaagtggcgacgcaactccgaaagc
taccgtgggacgagacggaggaatatctcgtgaagaaattactcaaggtgtgcaagctca
ggcattcatcggtaccagccgtcgctgcgctgattgcaaagttgtcccagttctatccga
cgcttgctgtgcgatgtctggacgctgtgctcgaagatgttcgattcggactagaagtaa
acgagacgtggatgcaccaacgacgtgtcgcaaatatgaggcttcttgcatgtttgtaca
aggaacgcgtctcgcacttccgcgagatccttgacacgctctacctgataatttctatcg
gttatgatgggcgcgaagcgaaggactacccgggcgacacgattcgcctccgcatggttt
gtacacttttagaaaacgcccttaaaggccacggtgcgatgaatcacgcgcagcgaaagg
aactcgatagatttctcatcttcttccagcgctatgccctaacaaaggacgtcgctgtag
atgttgcaaacgacgtcgtggaggtgctggtggcgttgaatccgcgaatgaaaatctgtg
agacttacgaggaagcgaatgccgagtgtaaaaaacttatcgagaagccaaatactacgc
ctggtggcatggagaccgtattggaagaagatgaagttgaggggttgagtgagagtgagg
aacctgaggatgaagacatggaggagtcggcggatgaggaggacgaagaatcatccgtta
gcgagccctcagtcgactcggacatggacgtcaatgatgaacatgcgtctggtgacggat
ccgaggcttccgaagaggagcaggaagttaaagttcgcatgaagctcaagcaagcttcga
tgcaagagcagcgagacttcgagcgcgaaatgaataaattccttggcacacctgctaatc
cggcccttggtagtgctacacgaaacttctcgaaagcgagtatttacaaaccgaagaaca
cttctgggggtacaatcatgttcaaaatgttggtaaagaaccagggaaagcaggtcacga
aggaactcaatgtacctgagggcgctgagtttgtggcgagcgtcaaggaggtcatgaaag
ctgaagaggctgagctcgctgaagtgaagcgcaaagtgctcaatatgggataccgcgatg
acgaagatgaggggtcaaatttcgttcctagatcgcgtcataattacggctggcgtgaga
aaccaaacgaccgtagagaatttaatgcgtcgagatggctgtag
DBGET
integrated database retrieval system