Ostreococcus tauri: OT_ostta04g03150
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Entry
OT_ostta04g03150 CDS
T01358
Name
(RefSeq) SWIB/MDM2 domain
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ota
Ostreococcus tauri
Pathway
ota03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
OT_ostta04g03150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ota03021
]
OT_ostta04g03150
03036 Chromosome and associated proteins [BR:
ota03036
]
OT_ostta04g03150
Transcription machinery [BR:
ota03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
OT_ostta04g03150
Chromosome and associated proteins [BR:
ota03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
OT_ostta04g03150
PBAF complex
OT_ostta04g03150
GBAF(ncBAF) complex
OT_ostta04g03150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
9834193
NCBI-ProteinID:
XP_022838796
OrcAE:
OT_ostta04g03150
UniProt:
A0A090N375
LinkDB
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Position
4:complement(554047..555219)
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AA seq
390 aa
AA seq
DB search
MSARPTHADARQWKRRRANDLDARARRERTREDVRECASANALRSLERELDEAIASRRAR
ARGTSRYERAVRARVRACVFASKTGVDGKGFVLRACGWPADGEAAEPWSSSDGDGRFAQY
VKTITITLDGERRPRTWTSDGRPGKDRFDGFEVRGRAESGTREATIRIEFHGDGERYKVA
RELAELLATPYATRKRVISEIWTYFSVNDLVSDDDASEVVVDQPMREVLVGAGMTVPTDG
KLKVVSVCEFVCTNMLSAVEPLEIRYKIDVSGPSPSKPECYDVEVEMMAPAYISTESDPE
KSIEQCEAHIRRAYPYIEAHLQRRNFLLRFAESPFDFINSCVRDQALGMYETKAEDLSYV
KARDAPERPAPRCSERYHEPWVDEAVMRLL
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcccgaccgacgcacgcggacgcgcgacagtggaagcggcgtcgcgcgaacgac
ttggacgcgcgcgcgcgacgggagcggacgagagaggatgttagggagtgcgcgagcgcg
aacgcgttgcgatcgctggagcgagagttggacgaggcgatcgcgtcgaggcgagcgcgg
gcgcgagggacgagtcggtacgaacgcgcggtgcgcgcgcgcgtgcgcgcgtgcgtgttc
gcgtcgaagacgggcgtggatgggaaaggattcgtgcttcgcgcgtgcggatggccggcg
gacggcgaggcggcggagccgtggagctcgagcgatggcgacggtaggtttgcgcagtac
gtgaagacgataacgataacgctcgacggagaacgccgaccgcggacgtggacgagcgat
ggtcggccggggaaggatcggtttgacgggttcgaggtgcgcggtcgggcggagagcggg
acgcgcgaggcgacgattcggatcgagtttcacggcgacggggagcggtacaaggtggcg
agagagttagcggagctcctggcgacgccgtatgcgacgcggaagcgcgtgatatcggag
atttggacgtatttttcggtcaacgatttggtgagcgacgacgacgcgtcggaggtcgtc
gtcgaccagccgatgcgtgaggttctcgtcggggcgggaatgacggtgccaacggatggg
aagttgaaggttgtgagcgtgtgtgagttcgtgtgcacgaacatgctcagtgcagtggag
ccgttggagattagatataagattgacgtgtcaggcccgtcgccgtcaaaacccgagtgc
tacgacgttgaggtagagatgatggcgccagcgtacatttcgaccgagagcgatccagag
aagagcatcgaacagtgcgaggcgcatattcgacgcgcgtacccgtacatcgaagctcat
ctacaaagaaggaactttctccttcggttcgcagagagtccgtttgatttcatcaactct
tgtgtgcgagaccaagcgctcgggatgtatgagacaaaggcggaagatttgtcgtatgtt
aaggcgcgagacgctccggagaggccggcgccgaggtgctcggagagatatcacgagccg
tgggttgacgaagccgtgatgcgattattgtga
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