Ostreococcus tauri: OT_ostta04g05280
Help
Entry
OT_ostta04g05280 CDS
T01358
Name
(RefSeq) Helicase, C-terminal
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ota
Ostreococcus tauri
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ota03019
]
OT_ostta04g05280
03041 Spliceosome [BR:
ota03041
]
OT_ostta04g05280
03036 Chromosome and associated proteins [BR:
ota03036
]
OT_ostta04g05280
Enzymes [BR:
ota01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OT_ostta04g05280
Messenger RNA biogenesis [BR:
ota03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
OT_ostta04g05280
mRNA cycle factors
Common to processing body (P body) and stress granule
OT_ostta04g05280
Spliceosome [BR:
ota03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
OT_ostta04g05280
Chromosome and associated proteins [BR:
ota03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
OT_ostta04g05280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
9833976
NCBI-ProteinID:
XP_022838882
OrcAE:
OT_ostta04g05280
UniProt:
A0A090M6L0
LinkDB
All DBs
Position
4:886698..888873
Genome browser
AA seq
616 aa
AA seq
DB search
MATWADDADELPPPIVPAPAPANAVTANAEKTSAANAQKTSGYVPPHLRNRGARDGASAR
GGGSFHDDRRGGGGGWDTGRGGGGWGGGGGGGGGGRFQRGEDYSGTSFGRREDRGGGGGG
GWDTGRSRFRREENPFAQQEADEKAAEANDPDSEATKIFTGENSGLDFDLYEDIPVETSG
RDVPEPIGNFADLDLGAAVNKNVQRCKFKKPTPVQKYAIPSALQGRDLMACAQTGSGKTA
AFCFPIIAGILKKGLQGGHMNRKTYPLALVLSPTRELASQIHEESRKFAYQTGVASCVIY
GGAPAVEQFRAMERGCDLLIATPGRLIDLIDRAKISLSRCVYLALDEADRMLDMGFEPQI
RQIVEQRDMPPCGERQTMLFSATFPREIQRMAADFLDDYIFLTVGRVGSSHALITQSVER
VNSYHEKSEMLLDLVEAVPGLTLVFVETKRGADQLEDFLFTNGKPATSIHGDRTQQEREA
ALKSFRSGKTPILVATDVAARGLDIPHVTHVINFDLPSDIDDYTHRIGRTGRAGKKGRAT
ALFLESKDGQIARSLVDLMSEANQEVPTWLTQVSGNSFGGGGRRRGGGGGNRFGGRDYRS
GGGGGGGGGGGWGREG
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtgggcggacgacgcggatgagctcccgcccccgatcgttcccgccccggcg
cccgcgaacgcggtgacggcgaacgcggaaaagacatccgcggcgaacgcgcagaaaacg
tcgggatacgtcccgccgcacctgcgaaatcgcggcgcgcgagatggggcttcggcgcgc
ggcggcggatcttttcacgacgatcgtcgaggcggcggcggcggatgggacacgggacgc
ggcggcggcggatggggtggtggcggcggcggtggcggcggcggcagatttcaacggggg
gaagattacagtggtacgtcgttcggacggcgggaagatcgcggcggcggtggtgggggg
ggttgggacaccggccgctcgcggtttcgcagagaggaaaacccattcgcgcagcaagaa
gccgacgaaaaagcggccgaggcgaacgatcccgattcggaggcgacgaagatattcacc
ggtgagaacagtggtttggactttgacttatacgaggacattcccgtggagacgagcggg
cgagacgtcccggaacccatcgggaactttgccgacctcgatttgggagccgcggtgaac
aaaaacgtgcagcggtgcaaattcaaaaagccgacgccggtacagaaatacgccattccg
tccgcgcttcaagggagagatttaatggcgtgcgcgcagacgggctcgggtaaaaccgcc
gctttctgcttccccatcatcgccggcatcctgaagaagggcttgcaaggcggtcacatg
aaccgcaagacgtatccgctcgcgctcgtgctctcgccgacgcgcgagttggctagccag
attcacgaagaatctcgcaagtttgcgtatcaaactggtgtcgcctcgtgcgtcatttac
ggtggcgccccggcggttgagcagtttcgcgccatggagcgcggttgcgacttgctcatc
gccactccgggtcgtttgatcgatctcatcgatcgcgcgaagatttcgctcagtcgatgc
gtctacctcgctctcgatgaggctgatcgtatgttggacatgggtttcgagccacaaatt
cgacaaattgttgaacagcgcgacatgccgccgtgcggcgaacgccagacgatgctcttc
tccgccaccttcccgcgcgagattcagcgaatggctgccgacttcctggacgactacatc
ttcctcaccgtcggtcgcgtcggttcgtcccacgccttgatcacgcagagtgttgaacga
gtcaactcgtaccacgaaaagagcgaaatgctcctcgacctcgtcgaggctgttccgggc
ttgaccctcgtctttgtcgagacgaagagaggtgcggatcaattggaggactttttgttc
accaacggaaagccggcgacgagcattcacggcgaccgaacgcaacaagagcgcgaggcg
gcgctcaagtcgttccgctcgggtaagacgccgattctcgtcgccacggatgtcgccgcg
agaggtttggacattccgcacgtcacccacgtcatcaactttgacctgccatcggatatt
gacgactacacgcaccgcatcggtcgtaccggtcgcgccgggaagaagggtcgcgccacg
gcgctctttttggagtccaaggatggtcaaatcgcgcgttcgctcgtcgacctcatgtcc
gaggcgaaccaagaggttccgacgtggttaacacaagtttctgggaattctttcggcggc
ggcggtcgtcgtcgcggcggcggcggcggcaataggtttggtgggagagactatcgctcc
ggcggcggcggcggcggcggcggcggcggcggttggggtcgggagggttga
DBGET
integrated database retrieval system
