Ostreococcus tauri: OT_ostta05g03840
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Entry
OT_ostta05g03840 CDS
T01358
Name
(RefSeq) Transcription Factor IIF,Rap30/Rap74,interaction
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
ota
Ostreococcus tauri
Pathway
ota03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
OT_ostta05g03840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ota03021
]
OT_ostta05g03840
Transcription machinery [BR:
ota03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
OT_ostta05g03840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
BcsB
Motif
Other DBs
NCBI-GeneID:
9834463
NCBI-ProteinID:
XP_022839071
OrcAE:
OT_ostta05g03840
UniProt:
A0A090M5Z1
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All DBs
Position
5:633123..634637
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AA seq
504 aa
AA seq
DB search
MPKCRVKFPSDLAKGTEVDAETIEDALQAFITKKPELKEILSSEKFRDFILVLSENQPEN
RDVIVPLDGKMSIAKDATYQAHLSRSYDLRSMTHPTRGYVVGRFRGERVPTFVAGEDAPV
EWQMRRMKSEVNGTSMTLTGGKKSHRGTFVGTRDAQGASYFVLMSRGKEFVAMPCEEWYT
FSHRAPRRVLTLEEAEAKMEAGKRAVGEAWGRMDKSAEPGYSDDESDGDRGDRRDDSSDE
EDAFKATKRGKKKGPPGGGLDSDDEDEGKKSGKAGGKSKEDETGEDWEHDEEWDDDEDEV
AIPDDEEAPKEVNKKIGGDSDAEDEGLDKEGLAVKKLLGKQEKMDGTQFSDSDSDSELEE
DFNPDKDDIGVNVVGSFVKQSKKLEAEETKAATSPPAMMKSASVSSIGVKRSASDAAVDT
APPGKAAKVAVAQPAAPKHTPIEATIIDIVRKNPDSTTVKLITKTCRKKGLLNSTAGAEE
LKAAIKNLLVMKKLRNGDQVLVLK
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaatgtcgcgtgaaattcccgagtgatctcgccaagggcaccgaggtcgacgcc
gagacgatcgaggacgctcttcaggcgttcatcacgaagaaaccggagcttaaagagatt
ttgagctctgagaaatttcgagatttcatcctcgttttgagcgaaaaccaacccgaaaac
cgcgatgtgatcgtcccgctcgacgggaaaatgtcgatcgcgaaggatgcgacgtaccag
gcccacctatcgcggtcgtacgacctgcgatcgatgacgcacccgacgcgtgggtacgtc
gttgggcgtttccggggcgagcgcgtccccactttcgtcgccggagaagacgctccggtt
gagtggcagatgcgacggatgaagagtgaggtgaacgggacgtcgatgacgctcaccggg
gggaagaagtcacacagagggacgtttgtggggacaagagacgcccagggggcttcatat
tttgtgttgatgtcgcgagggaaggagttcgtagcgatgccgtgcgaggagtggtacacg
ttctcgcaccgcgcgccgagacgggttctgacgctggaggaggcggaggcgaagatggag
gcggggaagcgcgccgtgggcgaagcgtggggacggatggacaagtcggcggagccaggg
tactcggacgacgagagcgatggagatcgaggcgatcgaagggacgactcgagcgacgaa
gaggacgcgttcaaggcgacgaagagggggaagaagaagggacctcccgggggtggactc
gatagcgacgacgaagacgaggggaagaagtctggtaaggctggaggaaagagcaaggaa
gacgagacgggagaggactgggagcacgacgaggaatgggacgacgatgaggacgaggtc
gcgatacccgacgacgaggaagcgcccaaggaagtgaacaaaaagatcggcggtgatagc
gatgctgaggacgagggtttggataaggagggcttggcggttaaaaagttacttggaaag
caagaaaaaatggatggaacgcagtttagtgactcagactcagactcagagctcgaagag
gacttcaaccccgacaaggacgatatcggcgtcaacgtcgtcggatcgttcgtgaaacag
agtaaaaagctggaggccgaggagaccaaggcagctacgagcccgccagcgatgatgaag
tccgcttctgtgtcctccattggcgtcaagagaagcgctagcgacgctgcggtggacact
gctccgcccggtaaggcggctaaagtcgcggtggcgcaacccgcggcgcccaagcatact
ccaatcgaagccaccatcatagatatcgttcgcaagaatccggacagcaccacggtgaaa
ctcatcaccaagacgtgtcgcaagaagggactgctgaacagcaccgccggcgccgaggag
ctcaaggcggcgatcaaaaacttgctcgtcatgaaaaagctacgaaacggcgaccaagtc
ttagtgttgaagtaa
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