Ostreococcus tauri: OT_ostta05g04950
Help
Entry
OT_ostta05g04950 CDS
T01358
Name
(RefSeq) Exosome complex RNA-binding protein 1/RRP40/RRP4
KO
K03679
exosome complex component RRP4
Organism
ota
Ostreococcus tauri
Pathway
ota03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OT_ostta05g04950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ota03019
]
OT_ostta05g04950
Messenger RNA biogenesis [BR:
ota03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
OT_ostta05g04950
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
OT_ostta05g04950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
EXOSC1
RRP40_S1
ECR1_N
Motif
Other DBs
NCBI-GeneID:
9834406
NCBI-ProteinID:
XP_022839122
OrcAE:
OT_ostta05g04950
UniProt:
A0A090N3I5
LinkDB
All DBs
Position
5:820090..821124
Genome browser
AA seq
344 aa
AA seq
DB search
MGAGVEATSEETRARFERAKTSLERAPARTTRPNAAFVAPGERIPGVEHGDFLRGHGTRA
IATASTTDETEETLVATTAGVVERVNKLVSVRALKSRYVPETGDVVLGKVTNVSGKRWIL
DINARQNGVLQLSAVHLPGNVQRRRNDVDELNMRTLYAEGDIVSSEVQSVYSDGAAALHT
RSLKYGRLKRGQLVRVTANLVRRLPQHFHRLEMDEFHDSVATGTHDVEILLGCNGYIWVG
APSAATAPRETELRREPNDAIDDLNEAYGDKVPLPQRENISRVALAVRALAELFLPISPP
AVMDVFKVSKEWGVAVQDMLGQGFLTRILEREVDKRVEAYEQGK
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcgggcgtggaggcgacgagcgaggagacgcgcgcgcggttcgagcgcgcgaag
acgtcgctcgaacgcgcgcccgcgaggacgacgagaccgaacgccgcgttcgtggccccg
ggcgagcgcatcccgggcgttgaacacggtgatttcttgcgaggacacggcacgagggcg
atcgcgacggcgtcgacgacggatgagacggaagagacgctcgtggcgacgacggcgggc
gtcgtcgagcgcgtgaacaagttggtgagcgtgcgcgcgttgaaatctcgatacgtcccg
gagaccggggacgtggtgctggggaaggtgacgaatgtgagcggtaagcgatggatctta
gacatcaacgccagacagaacggggtgcttcagctgagcgcggtgcacctcccggggaac
gtgcagaggcgaaggaacgacgtcgacgagctcaacatgcgaacgctctacgccgagggc
gacatcgtgagctccgaggtacagagcgtgtactccgacggggccgccgcgttgcacact
cgtagtctcaagtacgggcgcttgaagcgaggacagctcgtgcgcgtaacagcgaacctc
gtgcgtcgcctcccgcagcactttcacaggttagagatggatgagtttcacgacagcgtc
gcgacgggaacgcacgacgtggaaattttactcgggtgcaacggttacatttgggtcggc
gcgccgagcgcggcgacggcaccgcgagagacggaactccgccgtgagccgaacgacgcc
atcgacgacttgaacgaggcgtacggcgacaaggtgccgctaccccagcgcgaaaacatc
tcgcgcgtggcgctcgccgttcgcgcgctcgccgagttattcctacccatctcgccaccg
gcggtgatggatgtcttcaaggtgagcaaggagtggggcgtggctgttcaggacatgctc
ggacagggcttcttgacgcgcatccttgagcgggaggtcgacaagcgcgtcgaagcgtac
gagcagggcaagtag
DBGET
integrated database retrieval system
