Ostreococcus tauri: OT_ostta06g02080
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Entry
OT_ostta06g02080 CDS
T01358
Name
(RefSeq) Cleavage/polyadenylation specificity factor, A subunit, C-terminal
KO
K12830
splicing factor 3B subunit 3
Organism
ota
Ostreococcus tauri
Pathway
ota03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OT_ostta06g02080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ota03021
]
OT_ostta06g02080
03041 Spliceosome [BR:
ota03041
]
OT_ostta06g02080
03036 Chromosome and associated proteins [BR:
ota03036
]
OT_ostta06g02080
Transcription machinery [BR:
ota03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
OT_ostta06g02080
Spliceosome [BR:
ota03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
OT_ostta06g02080
Complex B
OT_ostta06g02080
Complex C
U2 SnRNP specific factors
OT_ostta06g02080
Chromosome and associated proteins [BR:
ota03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
OT_ostta06g02080
TFTC complex
OT_ostta06g02080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
9835462
NCBI-ProteinID:
XP_022839215
OrcAE:
OT_ostta06g02080
UniProt:
A0A090M6M5
LinkDB
All DBs
Position
6:complement(345676..349263)
Genome browser
AA seq
1195 aa
AA seq
DB search
MVHLYNLTLQKSGGITAAAYGNFSAAKAQEIVVVRNKVIELLRPDDSGRVQTVSSMEAFG
VVRSICALRLAGANRDYLCVGSDSGRVVILQFKKERNAFVKVHQETFGKSGCRRVVPGQF
VCADPKGRAICLGAMERSKLVYVMNRDNEANLTISSPLEANKSHAITYHMCALDCGLDNP
VFAAIELDYGEVDDDPTGEVVAETQKHLTYYELDLGLNHVVRKWSEPIDNGANHLIPVPG
GSDGPGGVLVCCENFIIYRHQDHEEVRAVIPRRTSLPGDRGVLIVSSAGHKSKKSFFFLA
QSEYGDIYKLSIEYSGDKVSEVKVKYFDTIPPCVSMCVLKTGFLFAASEFGNHALYQFAG
IGDDDAVESSSASLMETEQGYEPVFFDPRRLTNLYPIDKIDSLCPILDMQAHNLTEEDTP
QLYTLCGTGARSSLRILRQGIGMNELAMSSLPGQPNAIFTVKKKSSDQYDGYIVVSFLNA
TLVLAIGDTVTEVSDSGILGTTMTLQVCLMNDDSLLQVHAGGLRHIKADKRINEWRTPGR
KQISKCTCNSKQVVIALTGGEVIYFELDSAGQLIEVEKLETNGDIACVDIAPVPEGALRS
RFLAMGSYDGTVRVMSLNSDDCLQTLAVQALKGSTPSSLLILQTAGTESLQGSLLLNVGM
ANGVLMRATLDQVSGQLSDMRVRFLGTRAPKLVRTSVRGESALVALSSRPWLGYSEKGTF
VLSPISYVALEEVCSFSSEACPEGVVAISNQTLRIASVERLGENFHQTTIKLRYTPRAMS
ANPDTKMVALIESDQCSVPVGERESPEATSADEASEANGDEDELNMLPVEQYGAPKSSPG
TWAACVRIIDPKDAKSQYVLELGKNESAISICHVYLTGPNELLLAVGTAQNLTFAPRNCD
GGFIHLYRYGTDSKTLSLVHSTPTEGPVGALCGYRGHLLAGVNNSLRLYDFGKKKLLRKL
ENRNFPNFITTIHAASDRIYVGDVQESIHFVKYKADEGSMYIFADDTKPAYMTAALPLDF
DTLAGADKFGNIFVNRLPKDISEDMDEDPTGGKNIYSQGVLNGAPNKSETCARTFIGETV
CALTKGALQPGGIDIIMYGTFLGGIGALVPFQTRSEIDFFITLEMHMRQEASSIVGRDHM
AFRSYYAPVKNVIDGDLCEQFGALAPEVQRRIAEDMDRTPGEILKRLEQIRAIAV
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atggtgcacttgtacaacctcactctacaaaagagcggcggaatcaccgccgcggcgtac
gggaacttctccgcggcgaaggcgcaggagatcgtcgtggtgcggaacaaggtgatcgag
ctcttaaggccggatgactccggaagggtgcaaacggtgtcgtcgatggaggcgttcggc
gtcgtgcggtcgatctgcgcgcttcggctcgccggggcgaatcgggattatctgtgcgtc
ggctctgacagcggccgggtggtgatcttacagttcaagaaggagagaaatgcgttcgtg
aaggtgcatcaagagacgttcgggaagagcgggtgccgtagggtcgttccggggcagttc
gtgtgcgctgacccaaagggacgggcaatttgtttgggcgcgatggagcggagcaagctg
gtgtacgtgatgaacagagataacgaggcaaatttgacgatctcgtcgccgttggaggcg
aacaagtcgcacgcgatcacgtatcacatgtgcgcgctggactgcgggttggacaatccg
gtgtttgcggcgatcgagttggattacggtgaggtggacgacgatcccaccggtgaagta
gtggcggagacgcagaagcacctgacatactacgagcttgatctcggtctgaatcacgtt
gtgcgcaagtggagcgaaccgatcgacaacggcgccaatcacttgattccagtcccgggt
ggaagcgacggcccgggcggcgtcttggtgtgctgcgaaaactttataatctaccgacac
caagaccatgaagaggttcgagcggtcattccgcgccgcacgtctcttcctggggatcgc
ggagtcttgatcgtttcatccgccgggcacaagtcgaagaagtctttcttcttcttggcg
cagtccgagtatggcgatatttacaagctctcaatcgagtattcgggtgacaaggtgagc
gaggtcaaagtgaagtacttcgataccattcctccgtgcgtgagcatgtgcgtgttgaag
actggcttcctgttcgcggcgagtgaattcggtaatcacgctctgtaccagtttgccggc
atcggcgacgacgacgccgttgagagcagctcggcgagtctcatggaaacggaacaaggt
tacgagcccgtgtttttcgatccgagacggcttaccaacttgtacccaatcgataaaata
gacagtctgtgcccgattttagatatgcaggctcacaacttgacggaggaggacacgccg
cagctatacacgctgtgtggcaccggtgcgcgctcttcgttgcgcatcttgcgccaaggg
atcggtatgaatgagctcgcgatgagctcgcttccggggcaaccgaacgcgatcttcact
gtgaagaagaagagctcggatcagtacgacggatacattgttgtctcgttcctgaacgca
acgctggttctcgcgatcggtgacaccgtgacggaagtgagcgatagcggtattttgggg
acgacgatgacacttcaggtgtgtcttatgaatgatgattcgttgctccaggttcatgca
ggcggattgcgtcacatcaaagcggataagcgcatcaacgagtggcgaactccggggcgt
aagcaaatttccaagtgcacttgcaacagcaagcaagtggtcatcgctctcactggcggt
gaagtcatctacttcgagcttgattctgcgggacagctcattgaagtcgaaaagcttgag
acgaatggtgatatcgcttgcgtggacatcgcacccgtgcccgagggcgctctgaggagc
agattccttgccatgggttcgtatgatggcaccgtgcgcgtcatgagccttaattcggat
gactgcctacagacgttagctgttcaagcactcaaggggtctactccttcgagcttgctg
attctacaaaccgcgggcacggagtcgttgcaaggaagtctgttgttgaatgtagggatg
gccaacggcgtcttgatgcgggcgacgctcgatcaagtctctgggcagttgagtgacatg
cgcgtgcgtttcttgggtacgcgggcgccaaagctcgtgcgaacgagcgtccgtggtgag
tccgcactcgtggcgctgtcgtccaggccttggttggggtatagtgaaaaggggacattc
gttctctctccaatttcgtacgtcgcattggaggaagtgtgctcgttcagcagcgaggcc
tgtcccgaaggagtcgtcgccatttcgaaccaaacgttgcgcatcgctagtgtcgagcgc
ttgggcgagaatttccatcagactacgatcaaactgcgttacactccacgcgcaatgagc
gccaatcccgacacgaagatggtcgcactgattgaaagcgatcagtgcagcgttccggtt
ggcgaacgcgagagtccggaggcgacttctgccgacgaggcgtcggaggcgaatggggac
gaagacgagttgaacatgttacctgtcgagcagtatggggcacccaagagttcgcccggt
acgtgggcagcgtgcgtgcgaatcatagatccgaaggatgccaagtcgcagtacgtgctt
gagcttgggaagaacgagtccgccatcagtatttgccacgtctacttgactgggccgaac
gagttactcctcgccgtgggtacggcgcagaaccttacgttcgctccgcgcaactgcgat
ggaggtttcatccacttgtacagatatggcaccgacagtaagacgttgagtttggtgcac
tccactccgacggagggtcccgtcggggctctttgcggatacagaggccaccttctcgcg
ggcgtgaacaattctctccgtttgtacgatttcggtaagaaaaagcttctgcgcaaattg
gaaaacagaaactttcccaactttatcaccaccattcatgccgccagtgaccgaatttac
gttggcgacgtgcaggagtcaattcactttgtcaagtacaaagccgatgaagggagcatg
tacattttcgccgacgacaccaagccggcgtacatgacggccgctcttcctcttgacttt
gacacactcgctggtgctgacaagtttgggaatattttcgtcaaccgcttgccaaaggac
atcagcgaagacatggacgaggatccgactggtggaaagaacatctattcgcaaggagtg
ttgaacggagctccgaacaaatctgaaacttgcgcgagaacattcattggtgagacggta
tgcgcgctcaccaagggcgcgctgcaaccgggaggtattgatatcattatgtacggtact
ttcctcggcggcatcggcgcactcgtcccgttccagacgcgttcagagatcgacttcttc
ataacgttggagatgcacatgcgccaagaggcgtcatcgatcgtcggacgtgatcatatg
gcgttcaggtcgtattacgcgccggtgaagaacgtcatcgacggtgacttgtgcgagcag
tttggcgcccttgccccggaggtgcagcgaagaatcgccgaggatatggaccgaactccg
ggagaaatcttgaagaggctcgaacaaattcgcgccatcgcggtatag
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