Ostreococcus tauri: OT_ostta06g03010
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Entry
OT_ostta06g03010 CDS
T01358
Name
(RefSeq) Helicase, C-terminal
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ota
Ostreococcus tauri
Pathway
ota03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OT_ostta06g03010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ota03019
]
OT_ostta06g03010
03041 Spliceosome [BR:
ota03041
]
OT_ostta06g03010
03009 Ribosome biogenesis [BR:
ota03009
]
OT_ostta06g03010
03016 Transfer RNA biogenesis [BR:
ota03016
]
OT_ostta06g03010
Enzymes [BR:
ota01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OT_ostta06g03010
Messenger RNA biogenesis [BR:
ota03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
OT_ostta06g03010
Spliceosome [BR:
ota03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
OT_ostta06g03010
Complex C
U4/U6.U5 tri-SnRNP related factors
OT_ostta06g03010
Ribosome biogenesis [BR:
ota03009
]
Eukaryotic type
Pre-60S particles
Helicases
OT_ostta06g03010
Transfer RNA biogenesis [BR:
ota03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
OT_ostta06g03010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
ResIII
Motif
Other DBs
NCBI-GeneID:
9835566
NCBI-ProteinID:
XP_003079938
OrcAE:
OT_ostta06g03010
UniProt:
Q016S7
LinkDB
All DBs
Position
6:501050..504106
Genome browser
AA seq
1018 aa
AA seq
DB search
MRRRSTSPASRPPAKRHRTDEDAVLAAGGRRIAPTGIGHGCLHDVVRPKAAATTDETSTS
APRDEGAIETPTKPAKSYPFELDTFQQKAVEVLERKESVLVSAHTSAGKTVVAEYAIAMA
IRDGQRVVYTSPLKALSNQKYRELREEFEDVGLMTGDVVINPSASCLVMTTEVLRSMLYK
GGEVMREVGWVIYDEIHYMRDSERGVVWEESIVLLPDMVKYVFLSATIPNAREFAEWVCK
THNQPCHIVYTDFRPTPLEHYIFPANGEGIFLVMDRQSNFRDSNFEQAVTVISDSGGTAA
ARVANRGRGDDGKNEAVNQDIFKIIRMVVERNYDPVIVFAFNKHECEKMANSLHKVDLCD
DDEKKLIDTIYWNAMDALSEEDKRLPQVANLPNLLRRGLGVHHSGLLPILKEVIEILFQE
GLIKVLFATETMSVGLNMPARTVVFCSPRKFDGAGFRWITSGEYIQMSGRAGRRGKDDRG
LVILMMDERMDPPVAKNMLHGQSDTLDSAFRLNYAMILNLMRVEGADPESLIQSSFAQFQ
NDRALPGIEAKIVEIEKERDAVHIEDENAVDEYVKLQDGLDAMIRERRVVTNTPTYAVPF
LQPGRLVRVCTKVPSVFNSTEEEAIKIPAPGTEPGEDDVVWGMIVSFERIGGGGKSGKAA
YGVDILVRTRENRNGKTPLTVKDKSERYEIVLPNDSDESTEPRILRFPLEQIDIMSSVRV
YLPKDLHPREARDQCMSSVGEVIKRFPDGVPVLDFEKDMKINNDNFAKLLKRIEGIKSMM
RKHPIASSERLPEKLYAHREKRQLSIALKQAKRDAKAAAGLIMRDKLKQMRRVLRRLGHT
SAEGVVQTKGRVACELASVDELVTAELIFNGTFKEVDVDMLVALVSCLVWRERSRNAAKL
SEKTAEVYNRLKEVARKVGKQMVECKMHVDIEEYVDGFRSELMEIMIAWCKGNKFAEIMK
MTDLFEGSIVRAIRRVEEVLRQLADACRVIGENELQEKFLLASEKVKRDIVFVASLFL
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgacgatcgacgtcgcccgcgtcgcgcccgcccgcgaagaggcaccgcaccgac
gaggacgccgtgctcgccgctggcgggcgacggatcgcgcccacgggcatcggacacggg
tgtttgcacgacgtcgttcggccaaaggcggcggcgacgacagacgagacatccacgagc
gcaccgagggacgagggcgcgatcgagacgccgacgaagccggcaaaatcgtacccgttc
gagttggacacgtttcagcagaaagcggtggaggtgctggagcggaaggagagcgtgctg
gtgagcgcgcacacgtcggcggggaagacggtggtggcggagtatgctatcgcgatggcg
atcagagacggacagcgcgtggtatacacgtcgccgttgaaggcgttgagtaatcaaaag
taccgcgaactgcgagaagagtttgaggacgtgggtttgatgaccggggacgtggtcatc
aatccgagcgcttcgtgtctggtgatgacgaccgaggtgttgcggtcaatgctatacaag
ggtggcgaggtcatgcgagaggtgggatgggttatttacgacgagattcactacatgcga
gacagcgagcgaggggtggtttgggaggaatcgatcgttcttttgccggacatggtgaag
tatgtgttcctgtcagcgacgataccgaacgctcgtgagttcgcagagtgggtgtgtaag
acccataaccagccgtgtcacatcgtctacacggatttccgtccgacgccactggagcac
tatatatttcccgcgaacggggagggtatcttcctggtcatggatcggcaatcgaatttt
agggacagcaactttgagcaggcagtcaccgtcatctcggacagcggaggaacagccgca
gcgcgcgtggcgaatcgaggacggggcgatgacgggaaaaacgaagccgtaaatcaagac
atttttaaaatcattcgcatggtggtcgagcggaattacgatcctgtgatcgttttcgct
ttcaacaagcacgaatgtgagaagatggctaactctttgcacaaggtcgacttgtgtgac
gacgacgaaaagaaactcatcgacacgatttattggaacgccatggacgcactgtcggaa
gaggataaacgattaccgcaagttgcgaatctaccgaatctcttgagacgaggcctcggc
gtgcaccactccgggctgttgccaattctcaaggaagtgattgaaatattgttccaagag
ggattgatcaaggtgctttttgccaccgagaccatgtccgtaggcctgaacatgcccgct
cgtacggtcgtgttttgttcgccgagaaagttcgacggcgcgggcttcagatggatcact
tctggcgaatatattcaaatgtcaggcagagcaggtcgtcgtgggaaagacgaccgcggt
ctggtcatcctcatgatggacgagcgtatggacccaccggtggcgaagaatatgttgcac
ggtcagtccgatacacttgacagcgcatttcgcttgaactatgccatgattctgaacttg
atgcgcgtcgagggcgcggatccagaatcactcatccaatcctcgttcgcacagttccag
aacgaccgcgctcttcccggaatcgaagcgaagatcgtcgagattgagaaggagcgagac
gccgtgcatatcgaagatgagaacgccgttgatgaatacgttaagttacaagacggcctc
gacgcgatgattcgagagcggagggtggttacgaacacgcctacgtacgctgttccgttt
cttcaacctggccgtttagttagagtgtgcaccaaggtaccttcggtgttcaattcaacc
gaagaagaagcgatcaagattccggctccggggacagaaccaggagaggatgacgtcgtg
tggggtatgatcgtctcatttgaacgcatcggcggcggtggtaagtctggcaaagctgca
tacggcgtcgacatcttggtgcgcactcgtgaaaaccgtaacggcaagacgccgctgacg
gtaaaagataagagcgaaagatacgaaatcgtgctcccgaacgacagtgatgaatcgacg
gagccgcgtatcctccgtttcccgcttgagcagatcgacatcatgagtagcgtgcgcgtt
tacctgccgaaggatctgcatccgcgagaggcgagagatcaatgcatgagcagcgtaggc
gaggtcatcaagcgattcccagatggcgttcccgtgctcgacttcgagaaggatatgaaa
atcaacaacgataatttcgcaaagctattgaagagaattgaaggtatcaaatcgatgatg
aggaagcatccgattgcttcgagcgagcgcctcccagagaaactctacgctcatcgagag
aagaggcagctctcaatcgcattaaagcaggctaaacgagacgccaaggcagctgcggga
ttgatcatgcgagataaactcaagcagatgcgacgtgtgctgagacgtcttggacacacg
agcgccgagggcgttgtgcaaaccaagggaagggtcgcatgcgagctcgcatcggtagac
gagctcgtcacggcagagctcatctttaacggaactttcaaagaggtggatgtggacatg
ctcgttgcgttggtatcatgcctcgtttggcgcgaaagatctcgaaatgcagccaagttg
agcgaaaaaaccgccgaggtatacaatcgcctgaaggaggtcgcacgcaaggttggaaag
caaatggtcgagtgcaagatgcacgtcgatatcgaagagtacgtggatggtttcagaagt
gaacttatggaaatcatgatcgcctggtgtaagggcaataagtttgccgaaatcatgaag
atgacagatttattcgagggctcgatcgttcgcgctattcgcagagttgaggaggttttg
cgacagcttgccgacgcctgtagggtgataggagagaatgagttacaggagaagtttctt
ctggcgagcgaaaaggtaaaacgcgacatcgtcttcgtagcaagcttatttttgtaa
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integrated database retrieval system
