Ostreococcus tauri: OT_ostta07g03820
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Entry
OT_ostta07g03820 CDS
T01358
Name
(RefSeq) Polyadenylate-binding protein/Hyperplastic disc protein
KO
K13126
polyadenylate-binding protein
Organism
ota
Ostreococcus tauri
Pathway
ota03015
mRNA surveillance pathway
ota03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
OT_ostta07g03820
09123 Folding, sorting and degradation
03018 RNA degradation
OT_ostta07g03820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ota03019
]
OT_ostta07g03820
03041 Spliceosome [BR:
ota03041
]
OT_ostta07g03820
Messenger RNA biogenesis [BR:
ota03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
OT_ostta07g03820
mRNA cycle factors
Stress granule specific factors
OT_ostta07g03820
Spliceosome [BR:
ota03041
]
Complex C
Other components
Complex C specific factors
OT_ostta07g03820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RBD_DEAH11
RRM_occluded
RRM_7
RRM_RdRP1_2
RRM_MARF1
RBD_DGKtheta
LEM
Motif
Other DBs
NCBI-GeneID:
9836682
NCBI-ProteinID:
XP_022839495
OrcAE:
OT_ostta07g03820
UniProt:
A0A090M3M4
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All DBs
Position
7:complement(<621548..>623347)
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AA seq
599 aa
AA seq
DB search
MSAATAAATPAATANAEQTPAAPGAAPGAGTSSLYVGDLETSVTEAQLYEKFSSIGPVVS
IRVCRDLITRRSLGYAYVNFQSSSDAAHAIDVLNFQVINGKPIRVLYSQRDPAVRRSGVG
NIFIKNLDKAIDNKALLDTFAQFGTITSAKVAMDSAGNSKGYGFVQFETAEAAQAAIDNV
NGMELNDKQVYVGPFQRRADRSTQGEAKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCV
IMKDEEGKSKGFGFVCFESPEGAASAVENLDGYTEDEKTWVVCRAQKKAEREAELKAKFE
AERRERMEKMAGANLYIKNLEEGTDDEKLRELFNEFGTITSCRVMRDASGASRGSAFVAF
SSPDEATRAVTEMNGKMVGAKPLYVALAQRKEERRMRLQAQFAQRMPGAGMPGMAPYMPP
PGVPGAPMYYGQPPPGMMPPQPQPGFGFQPVMPGGPRPGMPGMYPGMPMPQRQGVPGAQR
GRGGRGVPNAGRGQRQNMRYTAAVNAVPMPPMPEAPANPMAILASQLSNAAPDQQRMILG
EALYPLVESKDATNAAKITGMLLEMDQSEVLHLIESPDALTSKVQEALAVLKAAAEEGA
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccgccaccgctgccgccactccggccgcgaccgcaaacgccgaacaaacgccc
gccgcgccgggtgccgcgccgggcgccgggacgtcgagcctgtacgtcggtgacctcgag
acctcggtcacggaggcgcagctgtatgagaaattcagctccatcggtccggtggtgtcc
attcgcgtgtgccgtgatttgatcaccagaaggtcgctcggctacgcgtacgtgaacttc
caatcctcgagcgatgctgcgcacgcgatcgacgtcctgaacttccaagtgatcaacggg
aagccgattcgggtgctgtactcgcagcgagacccggcggtgagacgttcgggtgtcgga
aacatcttcatcaaaaacttggacaaggcgatcgataacaaggctttgctcgacacgttc
gcgcagttcggtacgattacgtccgccaaggttgccatggactccgccggtaactcgaag
gggtacggtttcgttcagtttgaaactgccgaggctgcacaggccgccatcgacaacgtc
aacggcatggagttgaacgacaagcaagtctacgttggtccgttccaacgccgcgccgat
cgctccactcagggtgaggccaagttcaacaacgtgtacgtcaagaacttgagcgaaaac
ttgtccgacgagaagctgcgcgagaagttcgccgagcacggcgccgtgacgagctgcgtc
atcatgaaggatgaggagggcaaatccaagggcttcggcttcgtgtgcttcgaatcacca
gaaggtgccgcgtctgctgtcgaaaatctcgatggctacaccgaagacgagaagacctgg
gtggtctgccgtgcgcaaaagaaggcagagcgcgaggctgaattgaaggccaagttcgaa
gctgagcgccgcgaacgcatggagaagatggcgggcgccaatctctacatcaagaacctc
gaagaaggtactgatgatgaaaagctccgcgaactcttcaacgagttcggtaccatcacc
tcctgtcgtgtcatgcgcgacgcctctggcgcgtcccgtggctccgccttcgttgccttc
tcctccccggatgaggccacccgcgcggtgaccgaaatgaacggcaagatggtcggtgcc
aagccgctgtatgtcgccctcgctcaacgcaaggaagaacgtcgcatgcgtctccaagcg
cagttcgcgcagcgcatgccgggcgctggcatgccgggtatggccccgtacatgccaccg
ccgggtgttccgggcgcgccgatgtactacggccaaccgcccccgggtatgatgccgccg
cagccgcaaccgggcttcggtttccaaccagtcatgcctggcggtccgcgaccgggtatg
ccaggtatgtacccaggtatgccgatgccgcaacgccaaggggttccgggcgctcaacgt
ggccgaggtggtcgcggtgtaccgaacgctggccgtggccagcgccagaacatgcgttac
accgccgcggtgaacgctgtgccgatgccgccgatgccggaggccccggcgaacccgatg
gcgatcctcgcctctcagctcagcaacgccgctccggatcaacaacgcatgattctcggc
gaagctctttaccctcttgtcgagtcaaaggacgccacgaatgccgcgaagatcacgggc
atgttgctcgagatggaccaatctgaagttctccacttgatcgagtccccggacgccctg
acctccaaggtgcaagaagccctcgctgtgttgaaggcagccgccgaggaaggtgcttaa
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